Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0908 ATGGCTACACAGGGAAAAGTAATCACCTGCAAAGCTGCTGTGGCTTGGGAACCAAACAAGCCATTGAGTGTTGAGGATGTTGACGTGGCACCACCGCAGGCTGGAGAGGTCAGAATCAAAATTCTCTACTCTGCTCTCTGTCACACAGATGCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTATTCCCCTGTATACTTGGTCATGAGGCTGCTGGGATTGTGGAAAGTGTTGGCGAAGGTGTTACTTCAGTTCAGCCTGGTGATCATGTCATACCCTGCTACCAAGCTGAATGTGGAGACTGCAAGTTCTGCAAATCCGGCAAAACAAACCTCTGTGGCAAGGTCCGTTCGGCCACCGGAGTCGGCGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCCGTCAATGGAAAGCCTATCTATCATTTCATGGGAACTTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTGGCTAAGATTGATCCCAATGCACCTTTGGATAAAGTTTGTCTTCTTGGATGTGGGGTTCCAACTGGCCTTGGAGCTGTTTGGAACACAGCAAAGGTGGAAGCAGGTTCAATTGTTGCTGTTTTTGGCCTTGGAACTGTTGGTCTTGCTGTTGCGGAGGGTGCAAAAGCTGCCGGTGCATCACGGATTATTGGCATAGATATCGATCGCAATAAGTTTGAAAGAGCAAAGAATTTTGGAGTCACAGAGTTTATCAATCCAAAGGAGCATGAAAAGCCAATTCAGCAGGTCATAGCTGATCTCACAGATGGTGGAGTTGATTACAGCTTTGAGTGCATTGGAAATGTCTCGGTGATGAGAGCTGCTTTGGAATGCTGCCATAAAGGCTGGGGTACATCAGTAATTGTAGGTGTTGCAGCATCAGGTCAAGAAATATCGACTCGGCCCTTCCAGTTGGTGACCGGGCGAGTCTGGAAAGGAACAGCTTTCGGAGGCTTCAAGAGCAGGTCACAAGTACCTTGGCTTGTTGACAAGTACATGAAGAAGGAAATCAAGGTTGATGAGTACATTACACACAGTTTGAACCTTCCTGAGATTAACAAAGCATTTGACCTTTTGCATGAAGGAGGGTGTCTCCGTTGTGTTCTTGCATTGCATGTATGA 1140 0.4684 MATQGKVITCKAAVAWEPNKPLSVEDVDVAPPQAGEVRIKILYSALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTSVQPGDHVIPCYQAECGDCKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPNAPLDKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDRNKFERAKNFGVTEFINPKEHEKPIQQVIADLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHSLNLPEINKAFDLLHEGGCLRCVLALHV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0908 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Amo12g0908 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 376 - -
Amo12g0908 379 SUPERFAMILY GroES-like 2 198 IPR011032 -
Amo12g0908 379 Pfam Zinc-binding dehydrogenase 206 329 IPR013149 -
Amo12g0908 379 PANTHER ALCOHOL DEHYDROGENASE 3 376 - -
Amo12g0908 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Amo12g0908 379 Gene3D - 182 320 - -
Amo12g0908 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Amo12g0908 379 Gene3D - 13 372 - -
Amo12g0908 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo12g0908 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo12g0908 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0908 Amo-Chr12 20236346 20241020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0908 10 331 Monolignol Biosynthesis Gene Families AT1G72680 25.994 1.27e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0908 K00121 - psom:113290229 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0908 12 20236346 20241020 Amo12g0908 12 20236346 20241020 ECH
Amo16g1550 16 28722610 28725939 Amo12g0908 12 20236346 20241020 PCT
Amo06g0324 06 4695279 4698623 Amo12g0908 12 20236346 20241020 PCT
Amo12g0908 12 20236346 20241020 Amo16g1550 16 28722610 28725939 PCT
Amo12g0908 12 20236346 20241020 Amo06g0324 06 4695279 4698623 PCT