Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0897 ATGGATTTAAAAACTTCTTACTCAGATTGGTTATTTTCTGTGCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGCGTAAAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTAGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTAAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATCCCGATGTGAAGGCCTATAACTTGTACACCATGCAATTCTTTCTACCTGTCAATATGAATCGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGGTACTATGCAGAGAAAGTGTCAGACTTTGAGGAAAGTTTCGGATGCTGAATTATACGGGATAGAAGGCTCGAGTTTTTCCTGTATGTCCTTGACAAACAATGAAACTGAAACTGCTCATAACCAGGATATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCTGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGTTTGCCCAACAACCCGGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAATAAAGTTAATCGTTTAAAAAAAATACAAACCGTGCTTAACTCGGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACACGGGGGGACTTATGTCAGGTGGATCAATCAACCAAGAAATTAATGCACGTAAAAGTTCTCTCTTTCAGAAGAAATGTTCTGTAAAACATCCTGATCCTGCAGCGAAAGATGCAGTCACCATATCTCCGGCATTTGGAAGCAAAGGTAAGAATTTAGCCGTTAAATTCGAGGATGATAATGATAATGATGTCTGTCTGTTGGGAAACCAGCTTCTGCATTCAGACATGCTTATATCTAATTCCAAGGGTGAGTTGAAGAAAAACAAAGCTTTTTCTGTTGGTGTAGATTCAAAACCAATAGCCATGGATGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGATGTGATGTAGCATATCATAGTCCAAACTCCCTGGTTGCTGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCTACTACTTCAAGCATGACAGACTCGTCAAATGGAAATTTGAGAATCGGAAACATTTGA 1383 0.4035 MDLKTSYSDWLFSVQCLSNNKRAALTEIIDVLRAVCHAHSLPLALTWIPCYYSEGIGDEASRIRIKDGRKIPGEKTVLCIEESASYINDIVVGGFVHACVKHYLEEGQGVAGKALQSNRPFFYPDVKAYNLYTMQFFLPVNMNRSQEQQLLLDNLSGTMQRKCQTLRKVSDAELYGIEGSSFSCMSLTNNETETAHNQDMEGSRKQIEKKRSPVKKNVSLSVLQQYFSGSLKDAAKSLVCPTTRKRICRQHGIARWPSRKINKVNRLKKIQTVLNSVQGVEGGLKFDPYTGGLMSGGSINQEINARKSSLFQKKCSVKHPDPAAKDAVTISPAFGSKGKNLAVKFEDDNDNDVCLLGNQLLHSDMLISNSKGELKKNKAFSVGVDSKPIAMDDGGLRQEPFPVSILESSRCDVAYHSPNSLVADEMETYLNGADKLGEHHNPTTSSMTDSSNGNLRIGNI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0897 460 PANTHER PROTEIN NLP8 181 454 IPR045012 GO:0003700
Amo12g0897 460 Pfam RWP-RK domain 217 264 IPR003035 -
Amo12g0897 460 PANTHER PROTEIN NLP8 132 182 IPR045012 GO:0003700
Amo12g0897 460 PANTHER PROTEIN NLP8 3 131 IPR045012 GO:0003700
Amo12g0897 460 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 132 182 - -
Amo12g0897 460 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 181 454 - -
Amo12g0897 460 MobiDBLite consensus disorder prediction 439 460 - -
Amo12g0897 460 ProSiteProfiles RWP-RK domain profile. 197 286 IPR003035 -
Amo12g0897 460 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0897 Amo-Chr12 19766069 19767736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0897 15 348 NLP Transcription Factor Family AT3G59580 46.192 3.08e-102 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo12g0897 RWP-RK 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0897 - - aip:107627019 797.349