Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0896 ATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACGAATCGGATCTTTCCAACTCAAGTATCTCGACGATGAAGACGAATGGATGATGATGGTAAATGACTCAGATGTGGAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGTGCTGTGAAATTTCTTGTTTGCGAAATGCCTAGTGGTTTGAGCAGCCGTGGATTTAAAACAATTTAA 255 0.4039 MIRFKFDPAAGCLQLYEEVATRFKLRIGSFQLKYLDDEDEWMMMVNDSDVEECIEILDDLGTRAVKFLVCEMPSGLSSRGFKTI* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0896 84 SUPERFAMILY CAD & PB1 domains 2 74 - -
Amo12g0896 84 ProSiteProfiles PB1 domain profile. 1 72 IPR000270 GO:0005515
Amo12g0896 84 Gene3D - 1 73 - -
Amo12g0896 84 Pfam PB1 domain 3 69 IPR000270 GO:0005515
Amo12g0896 84 PANTHER PROTEIN NLP8 2 81 IPR045012 GO:0003700
Amo12g0896 84 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 2 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0896 Amo-Chr12 19765749 19766003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0896 2 80 NLP Transcription Factor Family AT2G43500 60.759 1.42e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0896 - - aip:107632302 149.058