Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0895 ATGGCTGTTTCACTATGGAGAGCTCGCTTAGCTTCCTCTCTTCTCTCCAATCTCACCAACTCTCTTCGCCGTTTCTCTTCCGACACAAATGCTCATAATGCTCGAGAGAGCATGATGAATCAGATGATGTATTCCGATATAAATTCTCGAATTGGGAGTTGTATGCCATTATCTTCTATGCGAATCGGAACTATCATTCACAATATTGAATTGAACCCAGGGCAAGGTGGCAAGCTGGTTAGAGCTGCTGGAACTTGTGCAAAAATCCTGAAAGAACCCACATCAAAATACTGTCTTATCCAGCTCCCCTCGGGTGTTAAAAAAATGATTGATTCTCGTTGCAGGGCCACCGTTGGTACTGTCTCAAATCCAAGCCACGGAGATAAGAAGCTTAGGAAGGCCGGACAAAGCCGGTGGCTTGGCCGGAGACCAGTTGTTCGAGGAGTGGCCATGAATCCAGTGGACCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTCGGTGGGGAAAAGGATCTCGAACTCCTTGGGGTAAGCCGACTAAGAGTGGATTCAAGACCGGGCCCCTGAAACGTAGGAAGTAG 591 0.4839 MAVSLWRARLASSLLSNLTNSLRRFSSDTNAHNARESMMNQMMYSDINSRIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKYCLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0895 196 SUPERFAMILY Translation proteins SH3-like domain 51 185 IPR008991 -
Amo12g0895 196 TIGRFAM rplB_bact: ribosomal protein uL2 45 192 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Amo12g0895 196 Gene3D - 40 121 IPR014722 -
Amo12g0895 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Amo12g0895 196 Pfam Ribosomal Proteins L2, C-terminal domain 51 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo12g0895 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo12g0895 196 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 38 196 - -
Amo12g0895 196 PANTHER RIBOSOMAL PROTEIN L2 38 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo12g0895 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo12g0895 196 MobiDBLite consensus disorder prediction 149 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0895 Amo-Chr12 19753981 19755862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0895 24 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.816 3.30e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0895 - - lang:109347761 302.753