Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0878 ATGGCAAATTGTAGAGCAGAACAGACGATGGCCTGCATGGAGGGAGAATCGGTGATGAACCATTCTGATGGGTCACTCTGTGCTAAAGAGGAGAGAAGCGATGCCTATGGTCCCGGTAGTAACAAATTTGAGGATGGGGGATTAGGAGTGGACTCAAAGTCACGTGAGTATTTTGGGGACAATTTCTATGACAACTGGGAAGAGAGAGCCGTCGACGGTATTGCAAAGCTTGGATGTATTAATTTCAAAGAAATAACCGCTGAGATTATGATGTGTCATTTTTCGGATCGATCAGTTGCATTTTTGTTTTACAGTTTGTATGCGAAAATGAATGGTTTTGCTGTGAGGAAGAATAAAATTCAACGGAATGTGAAGAATGAGGTTACACAACAAGAATTTGTATGTTTTCGGCAGGGCTCAAGAGATATAGGGTTTGTTAACGACGGATTGCGACAGAAACGTGAGGCGAAGGCGGAGACTAGATGCGGTTGTGAGGCAAAGATGCGAGTTCACGTGCACTTAGAAAGTGGTAGATGGATAATATCGTACTTTCAGGAAGTTTACAACCACAAATTTTTAGAGGATAGACTAACCTGTATGCTATCGGGGCATAGGAAAATGGATGCAGTCATTGTGGAACAAATGAACATGATGCTGAAAGTTGATATTAAAATGCCACAGATTTATTCGTCTTTTGTGCACACTGGTGAGGGATTCCAAAATTTTATGCGTTGCATATCCCAAAGGAGGTCTGGAAAAGCACACTCTGATCTGCTATCTGTGGTTGGGGATATGTCAGCTTCCAACAAGCTCACAAAAGAGATTTTCTTCTTATTCAGTCCGATGCTTTTCCGGACTTGTACTCTGAAGGTACAGACACATACTTTGAGCCAAACTTGTGATATATACACTTTGTCAAGTAACATTTTCAAGTGCTCGTGCTTGCGGATGGAGTCTCTGGGTATACTGTGTGATCATATTGTAGCAGTGCTCATACATTCTAAGAATGCTCGCTCCAAAGTAAGGGCATTTGTGGAGAAAGCTCTGTTTTGCTGGGATTCAACGATCACGTTGGATGCTGAATTAAAGTGCAGGGAAATGTGTGTTCTGCAATATGGAGATGAAGCTGAATTTGTTGACATGATGGATAAAGTTTGTTGTGAGATATCGCGGCTGAAAGAGAAAAAAGATTGTGGTGATCTAGGAGATCGGAATAAAGTTCGGAAAGCATCAACATTAGAGGGGTGCGTGAGGGATCCACAAATGGCTCGGCATCCAAAGTGGCAAAGAAAGGACGCAAACCACACATTGGTGAAGGGTGTCAAGAGGTGCAATATTTGTCACCATATAGGCCATAATCGATTATCTTGCCAGTTAAACCCTAATAGTCGAAGAAATACACAAGAAGGTGCATCATATTTTGGTACTGAGGGTGAGGACGAGACTGGAATGATCGGTGACTCATCCGAGGAGTGCATGGCTAATGGAATGTATTATTTTAGATGGCGTGGAATGGTGCAACAGAGTTTGGATTGGCCGAGGACTATAACTCAGAGGGAGAAATATCATATCCATACTTCAACTGAATCCGCTTACATTTCATTTGAGTGGAAGGATAATATGGTGGGTCGTATAAAGAGTTGTCATAGTATTTATCAAACCTTATGCAGTAGGTGTTCGAGAAATTTAGTTTCTCACAAGATCATGCATTATGCTCTATATTTGAAACAAAAAATGTATGTGTAG 1746 0.4152 MANCRAEQTMACMEGESVMNHSDGSLCAKEERSDAYGPGSNKFEDGGLGVDSKSREYFGDNFYDNWEERAVDGIAKLGCINFKEITAEIMMCHFSDRSVAFLFYSLYAKMNGFAVRKNKIQRNVKNEVTQQEFVCFRQGSRDIGFVNDGLRQKREAKAETRCGCEAKMRVHVHLESGRWIISYFQEVYNHKFLEDRLTCMLSGHRKMDAVIVEQMNMMLKVDIKMPQIYSSFVHTGEGFQNFMRCISQRRSGKAHSDLLSVVGDMSASNKLTKEIFFLFSPMLFRTCTLKVQTHTLSQTCDIYTLSSNIFKCSCLRMESLGILCDHIVAVLIHSKNARSKVRAFVEKALFCWDSTITLDAELKCREMCVLQYGDEAEFVDMMDKVCCEISRLKEKKDCGDLGDRNKVRKASTLEGCVRDPQMARHPKWQRKDANHTLVKGVKRCNICHHIGHNRLSCQLNPNSRRNTQEGASYFGTEGEDETGMIGDSSEECMANGMYYFRWRGMVQQSLDWPRTITQREKYHIHTSTESAYISFEWKDNMVGRIKSCHSIYQTLCSRCSRNLVSHKIMHYALYLKQKMYV* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0878 581 ProSiteProfiles Zinc finger SWIM-type profile. 303 335 IPR007527 GO:0008270
Amo12g0878 581 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 68 227 - -
Amo12g0878 581 Pfam SWIM zinc finger 312 334 IPR007527 GO:0008270
Amo12g0878 581 SMART 26again6 310 337 IPR006564 GO:0008270
Amo12g0878 581 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 68 227 - -
Amo12g0878 581 Pfam FAR1 DNA-binding domain 103 193 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0878 Amo-Chr12 19302254 19305066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g0878 FAR1 4.3e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0878 - - adu:107493030 339.347