Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0877 ATGGATATTCCTTCTCACTCAGATGAATCAGATGAAAACATGTCCCCAGATAGATCTATTATGACAGAAAAGAGATCCTCTGCTTCACTCGACATTGATGGTCTAGCAAARGAAGTGCAAGAGGGATCATCCGATCAGAAGGCAATCAAGGAGAAAAAGGCAAAGCGCTCAAGGAAAAAACAACTTGTTCAAGAAGAGGAGAGGGTTAGAGGTCGWGTGAACATGAAGGTTTACTTGTCGTACATGGCTGCAGCATATAAAGGCTTAYTGATTCCGCTCATAATTATGGCACAATCATTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCTTGGGCAAATCCTCAAACYGCTGGAGACGAGCCAAAAGTAACTCCAACTGAGCTTCTTCTCGTGTACATGGCCCTTGCTTTTGGCAGCTCATTGTTYATATTTGTAAGGGCTGTTCTGGTAGCTACATTTGGTCTTGCTGCTGCGCAAAAATTATTTTTCAGCATGCTCAGAAGTATTTTCCGTGCACCAATGTCTTTCTTTGACTCTACACCATCTGGAAGGGTCCTGAATCGGGTTTCTGTTGATCAAAGTGTTGTGGATCTCGACATTCCTTTTCGACTYGGAGGGTTTGCTTCAACAACAATACAGCTCATAGGAATTGTTGCTGTAATGACAACAGTTACATGGCAAGTTTTGCTCCTGGTTATCCCAATGGCTATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGAATTGTAAGCATCCAAAAATCTCCAATAATACATCTTTTCGGTGAATCAATTGCGGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTTTACCTTTTGGATTGTTTTGCACGGCCATTCTTTTGCAGCCTTGCAGCTATTGAGTGGCTATGCTTGCGCATGGAATTACTCTCCACTTTTGTGTTTGCTTTCTGTATGGTACTACTTGTGAGTGTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCCGTGACGTATGGCCTGAATTTGAATGGACGTCTATCTCGGTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCTATCGAAAGGATTTATCAGTACAGCCAAGTTCCTAGTGAAGCACCTGCAATTGTTGATGATTCTCGTCCTCCGTCCTCATGGCCCGAGAATGGAACAATCCAAATAGTTGATTTGAAGATACGATACAAGGAAAATCTTCCATTGGTGCTTCGTGGAATATCATGTACATTTCCTGGTGGGAAGAAGATTGGAATAGTCGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGATTGGTTGAACCATCCACGGGGAGTATCATTATTGACAACATCAATATTTCAACAATTGGCCTCCATGACCTTCGAAGCCGTCTGAGTATAATACCACAAGATCCAACCTTATTTGAAGGCACAATACGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGCGATTTGGGAGGCACTGGATAAGTCTCAGCTTGGAGAGGTTATTCGATCAAAAGGACAAAAGCTTGATACGCCGGTTCTAGAAAATGGAGATAATTGGAGTGTAGGGCAACGACAACTTGTTGCTCTAGGCCGAGCGCTACTTAAACAGTCAAAGATACTTGTACTTGATGAAGCAACGGCATCGGTTGATTCTGCTACTGATAATCTTATCCAAAAGATTATTCGAGAAGAGTTCAGAGACTGCACTGTTTGTACTATTGCACATCGTATTCCTACAGTTATTGACAGTGATCTAGTTCTGGTTCTCAGTGATGGCCGGGTCACAGAATTTGACACTCCATCACGGCTATTAGAGGATAGGTCATCCATGTTCCTAAAGTTGGTAAGYGAGTATTCATCACGGTCGAGTGGCATACCAGATTTYTAA 1971 0.4252 MDIPSHSDESDENMSPDRSIMTEKRSSASLDIDGLAKEVQEGSSDQKAIKEKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIMAQSLFQFLQIASNWWMAWANPQTAGDEPKVTPTELLLVYMALAFGSSLFIFVRAVLVATFGLAAAQKLFFSMLRSIFRAPMSFFDSTPSGRVLNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTTVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIVDDSRPPSSWPENGTIQIVDLKIRYKENLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSTGSIIIDNINISTIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDKAIWEALDKSQLGEVIRSKGQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDSATDNLIQKIIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVTEFDTPSRLLEDRSSMFLKLVSEYSSRSSGIPDF* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0877 656 Coils Coil 49 69 - -
Amo12g0877 656 SMART AAA_5 436 621 IPR003593 -
Amo12g0877 656 Gene3D - 393 645 IPR027417 -
Amo12g0877 656 Gene3D ABC transporter type 1, transmembrane domain 52 391 IPR036640 GO:0005524|GO:0016021
Amo12g0877 656 CDD ABC_6TM_ABCC_D2 91 385 IPR044726 GO:0140359
Amo12g0877 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 644 IPR003439 GO:0005524
Amo12g0877 656 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 656 - -
Amo12g0877 656 MobiDBLite consensus disorder prediction 1 19 - -
Amo12g0877 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 641 IPR027417 -
Amo12g0877 656 SUPERFAMILY ABC transporter transmembrane region 90 396 IPR036640 GO:0005524|GO:0016021
Amo12g0877 656 MobiDBLite consensus disorder prediction 1 63 - -
Amo12g0877 656 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 656 - -
Amo12g0877 656 CDD ABCC_MRP_domain2 408 628 - -
Amo12g0877 656 Pfam ABC transporter 427 575 IPR003439 GO:0005524
Amo12g0877 656 Pfam ABC transporter transmembrane region 102 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g0877 656 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 93 363 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0877 Amo-Chr12 19290612 19295042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0877 426 643 Calmodulin-binding Proteins AT2G36910 34.091 2.29e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0877 - - gmx:100781010 1150.19