Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0874 ATGGAGTCGGACGAGTACGACTTTCAGGAAGATGAAACAGAACACAACCATCATGCAGAGGCCGATGTCGACAATGGGGATGCGGTTGATTTGGAAGACAGTTTGGACGGCGCCGTAGGAATGTCTGACAATTATGCGGAAGACGAGTTTTACGCTGTTGATTCCGTGGAGTCGTTAGGTTGGATTGATTTTTTGAACTTGAGCGAGGAGGATGTTCTCCGATTTAATTTCGCAGATGTTGACATTGCATTTGAGTTCTACCAGCAATATGCAAAGCACCATGGCTTCGGGGCGAGACGTTCCAGAAGCGAAAAACGGTACCGATCCCCGAAGTTCTACTCGATGCCTAACCGGCAAAAGAGGCCGAGGGCTGAGACACGTTGTGGATGCCCTGCAAGGATGCTACTCCACATGGACGATGAATCAGGACGTTGGCACGTTGCGTACTTTTCAGACGCGCATAACCACCACGTTCTTGAGTTGCGATTTTCTTCCATGCTCCCAGGCCATCGGAGGATGAGCGAAGCGGACATCGAGCAGATGAACGACATGCGCAAAGGGGGCATTAGCATCTCCCGAATCCACGATTTTATGGCGAGCCTAGCCGGCGGGTATCATAATTCTCGATACAGCTACACTGAGTTTTTACGTCATTTCCATCGATGCTTGATGTTCGTGCGTGCAAAGGAGCTGGAGGCTGATTTTGAGTGTGCAAAGGGTGACCCTGTTATGACCACCAACCTGAAACAGCTGGAGCGGAGTGCAGCCGAGAACTACACTCGTGCAATATTTTATTTGTTTGTTCCCATTCTTGACAGGGCCTGTGCAATGAGGGTGGTTAACTCTGAAGACAATGGTTCCTATTTTATCCACACCGTCTCTCGATACGGCACTCCGGGAAAGGATTGGCGTGTTGTTACAACGTCTGATACGAGGGAGGTCCGATGCACATGCATGAGAATGGAATGTTTCGGGGTCCCCTGTGAACATATAATTGCGATGCTTGTTCTTAACAATGTTCATGAGATCCCGAGGTCTCTGATATTYCCGAGATGGACCAAGGATGCAAAGCTTGTGGCGGTGCAGTCGATGGGCGTGATTTGGGATTCTGTACAACTGACACAACACTGGTGCCTGATGGATTGGTACCGGAAAGTGTGCAAGATTGCATGTCACAACACTGAAAAGTTCCAGTTTGCAAGAGACATTGCCATGCTGATGCTGAAGCACTTCGAGAACGAAGATGCAGGAGACACCAGTTTTCCACCCGAGGGGCCACCTACCGAGGGTGGCAGTGGCCCGGCGCGGAATCCACCCAGGCGCAATACAAAGGGTAACGGTGCTCATGGTGGAAAGAAAATCCAGCGATGTCGTTTGTGCCGGGAGGTGGGACACAACAGGACGACGTTTCCAGACCGCCGCACAATGGAGTCATCCAGCGCAGTTGCAGATGACATGGATTCGATGGACACTGACATGGTGGGTTAG 1488 0.5067 MESDEYDFQEDETEHNHHAEADVDNGDAVDLEDSLDGAVGMSDNYAEDEFYAVDSVESLGWIDFLNLSEEDVLRFNFADVDIAFEFYQQYAKHHGFGARRSRSEKRYRSPKFYSMPNRQKRPRAETRCGCPARMLLHMDDESGRWHVAYFSDAHNHHVLELRFSSMLPGHRRMSEADIEQMNDMRKGGISISRIHDFMASLAGGYHNSRYSYTEFLRHFHRCLMFVRAKELEADFECAKGDPVMTTNLKQLERSAAENYTRAIFYLFVPILDRACAMRVVNSEDNGSYFIHTVSRYGTPGKDWRVVTTSDTREVRCTCMRMECFGVPCEHIIAMLVLNNVHEIPRSLIFPRWTKDAKLVAVQSMGVIWDSVQLTQHWCLMDWYRKVCKIACHNTEKFQFARDIAMLMLKHFENEDAGDTSFPPEGPPTEGGSGPARNPPRRNTKGNGAHGGKKIQRCRLCREVGHNRTTFPDRRTMESSSAVADDMDSMDTDMVG* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0874 495 MobiDBLite consensus disorder prediction 10 25 - -
Amo12g0874 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 196 414 IPR031052 GO:0006355
Amo12g0874 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 76 160 IPR031052 GO:0006355
Amo12g0874 495 MobiDBLite consensus disorder prediction 1 30 - -
Amo12g0874 495 PANTHER OS01G0607050 PROTEIN 196 414 - -
Amo12g0874 495 PANTHER OS01G0607050 PROTEIN 76 160 - -
Amo12g0874 495 ProSiteProfiles Zinc finger SWIM-type profile. 303 339 IPR007527 GO:0008270
Amo12g0874 495 MobiDBLite consensus disorder prediction 415 495 - -
Amo12g0874 495 Pfam FAR1 DNA-binding domain 85 159 IPR004330 -
Amo12g0874 495 MobiDBLite consensus disorder prediction 455 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0874 Amo-Chr12 19258271 19263850 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g0874 FAR1 2.2e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0874 - - adu:107493880 534.258