Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0871 ATGGAGGGTTCAGATTTTCTAAATAGTATCTCAGCTTCAATATTATCAAAACATTTCTCGGACTCTGAGATTCTATCCGACACGATCCTAGGATTGCCATTTTTGGAACTTGCTGCAATCTGCGTGAACCTTACCCTTGTTGTGTTGTTCCTCTTTGTTGTATCCGTGAGGAAGATTTGTGTGTGCGAAGGTCGGATTCGAATTAATAAGGAAAACGGCATCGCCACCAGCACCACCMCCATTAATGGAAACAATGGCATTGATGGTGAAGTTCAAATAGGTTCAATGTTCAAGTTCTCAGTGTTCTCTTGTTTCTATGTCCTTTTTGTTCAAGTTGTGGTGCTTGGTTTCGATGGGGTTTCTTTGATTTCAAATGGGGCSAATGGAAAACATGTGAACTGGTTCCTTCTATTTGTGCCAKCTGCACAAGGTTTGGCTTGGTTTGTGTTGAGCTTCTCAGCATTGCAATGCAAGCTCAAAGTTTCTCATAAGTTCCCTTTTCTCTTGAGGGTTTGGTGGTTATTGTCCTTTGTTATCTGTTTGTGCAATTTGTATGTTGAYGTGAGAGGTCTTTATATGGAAGGTCCCAAATACCTTTCCACTCGCGTAGTTGCAAATTTCGCCGTCRCTCCGGCRCTTGCATTCTTGTCTGTGGTTGCAATTAGGGGTGTTACCGGTATACAAGTTTGTGTGGACCCTGATCTTCAGGAGCCATTGCTTGTTGAAGAGGAGACGGGTTGTCTCAAGGTTACACCSTATAAAGATGCCGGAATTTTCAGCTTGGCCACGCTTTCGTGGCTGAATCCGCTTCTTTCCGTTGGTGCAAAGAGACCCCTCGAGCTTAAGGACATTCCCCTTGTAGCRCCCAAGGATAGAGCCAAGACTAGTTATAAGATTTTGAACTCAAATTGGGAGAGATTGAAGGCTGAAAACCCCTCTAAGCAGCCTTTGTTAGCTTGGGCGATTCTCAAGTCGTTTTGGAAGGARGCAGCCGTGAATGCYATCTTTGCAGGTCTGAATACTTTGGTAGCTTATGTTGGTCCATATATGATAAGTTACTTTGTTGATTACTTGGGTGGCATAGAGACTTTTCCTCATGAAGGCTATGTCCTCGCGGGAATATTCTTTGCTGCRAAGCTTGTGGARACGCTGACGACTCGGCAGTGGTATCTAGGAGTGGACATCTTGGGKATGCATGTCAGATCGGCKCTAACGGCGATGGTGTACCAAAAGGGGCTAAGGCTGTCGAGCTCAGCCAAGCAAAGTCACACAAGTGGGGAGATTGTCAATTACATGGCTGTTGATGTTCAGAGGGTAGGGGATTACTCTTGGTATCTTCACGACATGTGGATGCTTCCGATGCAGATTGTTCTTGCTCTTCTAATTTTGTACAAGAGTGTTGGAATAGCTGCCATTGCAACATTGATTGCTACAATAATTTCCATTGTTGTAACTGTTCCTGTGGCTAGAATACAAGAAAATTACCAAGATAAATTGATGGCTGCTAAGGATGAAAGGATGAGAAAGACATCAGAGAGTTTAAGGAATATGAGGATTCTCAAGCTACAAGCTTGGGAAGACAGGTATCGTATACAATTGGAGGAAATGCGTGGAACGGAATACAAGTGGCTGAGGAAAGCGCTCTATTCTCAGGCTTTCATAACCTTCATATTCTGGAGCTCCCCGATTTTTGTGTCGGCAGTCACTTTTGCTACTTGCATATTGTTGGGTGGTCAGCTGACAGCAGGCGGTGTCCTTTCTGCCCTGGCTACATTTCGGATCCTCCAAGAACCTCTGAGAAACTTTCCGGACTTGGTGTCAACGATGGCTCAGACAAAAGTTTCGCTTGATCGGATAACTAGTTTTCTGCAGGACGAAGAATTGCAGGAAGATGCAACTATCGTCTTGCCACCAGGCATGACTGACACTGCCGTAGAGATCAAGGATGGTGTCTTCTGCTGGGACCCTTCTTTGTCTAGGCCTACACTGTCAGGAATACATATGAAAGTCGAAAAGGGCATGCGTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCGGGTGAAGTTAAAGTATGTGGCACTGCTGCATATGTCTCCCAATCAGCATGGATACAGACAGGAAATATAGAAGAAAATATCCTCTTTGGAAATGCGATGGACAAACCAAGGTACAAGAAGGTTATTCATGCTTGTTCACTGAAGAAGGACCTAGAGCTTTTCTCACATGGAGACCAAACAATTATCGGTGATAGAGGTATAAACCTCAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTTTATCAAGATGCTGATATTTATCTCCTTGATGATCCCTTTAGTGCAGTTGATGCCCACACCGGATCGGATTTGTTCAGGGAGTATGTATTGACAGCATTAGCCAAAAAAACAGTCATTTTTGTGACGCATCAAGTTGAATTTCTGCCTGCTGCTGATCTGATACTGGTTCTTAAAGAAGGACAAATCATACAGGCAGGAAAATATGATGAGCTTCTACAAGCTGGAACAGATTTTAAGACTCTAGTTTCAGCTCATCATGAAGCAATAGAGGCTATGGATATTCCTTCTCACTCAGATGAATCAGATGAAAACATGTCCCCAGATAGATCTATTATGACAGAAAAGAGATCCTCTGCTTCACTCGACATTGATGGTCTAGCAAARGAAGTGCAAGAGGGATCATCCGATCAGAAGGCAATCAAGGAGAAAAAGGCAAAGCGCTCAAGGAAAAAACAACTTGTTCAAGAAGAGGAGAGGGTTAGAGGTCGSGTGAACATGAAGGTTTACTTGTCGTACATGGCTGCAGCATATAAAGGCTTAYTGATTCCGCTCATAATTATGGCACAATCATTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCTTGGGCAAATCCTCAAACYGCTGGAGACGAGCCAAAAGTAACTCCAACTGAGCTTCTTCTCGTGTACATGGCCCTTGCTTTTGGCAGCTCATTGTTYATATTTGTAAGGGCTGTTCTGGTAGCTACATTTGGTCTTGCTGCTGCGCAAAAATTATTTTTCAGCATGCTCAGAAGTATTTTCCGTGCACCAATGTCTTTCTTTGACTCTACACCATCTGGAAGGGTCCTGAATCGGGTTTCTGTTGATCAAAGTGTTGTGGATCTCGACATTCCTTTTCGACTYGGAGGGTTTGCTTCAACAACAATACAGCTCATAGGAATTGTTGCTGTAATGACAACAGTTACATGGCAAGTTTTGCTCCTGGTTATCCCAATGGCTATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGAATTGTAAGCATCCAAAAATCTCCAATAATACATCTTTTCGGTGAATCAATTGCGGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTTTACCTTTTGGATTGTTTTGCACGGCCATTCTTTTGCAGCCTTGCAGCTATTGAGTGGCTATGCTTGCGCATGGAATTACTCTCCACTTTTGTGTTTGCTTTCTGTATGGTACTACTTGTRAGTGTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCCGTGACGTATGGCCTGAATTTGAATGGACGTCTATCTCGGTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCTATCGAAAGGATTTATCAGTACAGCCAAGTTCCTAGTGAAGCACCTGCAATTGTTGATGATTCTCGTCCTCCGTCCTCATGGCCCGAGAATGGAACAATCCAAATAGTTGATTTGAAGATACGATACAAGGAAAATCTTCCATTGGTGCTTCGTGGAATATCATGTACATTTCCTGGTGGGAAGAAGATTGGAATAGTCGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGATTGGTTGAACCATCCACGGGGAGTATCATTATTGACAACATCAATATTTCAACAATTGGCCTCCATGACCTTCGAAGCCGTCTGAGTATAATACCACAAGATCCAACCTTATTTGAAGGCACAATACGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGCGATTTGGGAGGCACTGGATAAGTCTCAGCTTGGAGAGGTTATTCGATCAAAAGGACAAAAGCTTGATACGCCGGTTCTAGAAAATGGAGATAATTGGAGTGTAGGGCAACGACAACTTGTTGCTCTAGGCCGAGCWCTACTTAAACAGTCAAAGATACTTGTACTTGATGAAGCAACGGCATCGGTTGATTCTGCTACTGATAATCTTATCCAAAAGATTATTCGAGAAGAGTTCAGAGACTGCACTGTTTGTACTATTGCACATCGTATTCCTACAGTTATTGACAGTGATCTAGTTCTGGTTCTCAGTGATGGCCGGGTCACAGAATTTGACACTCCATCACGGCTATTAGAGGATAGGTCATCCATGTTCCTAAAGTTGGTAAGYGAGTATTCATCACGGTCGAGTGGCATACCAGATTTYTAA 4596 0.4332 MEGSDFLNSISASILSKHFSDSEILSDTILGLPFLELAAICVNLTLVVLFLFVVSVRKICVCEGRIRINKENGIATSTTXINGNNGIDGEVQIGSMFKFSVFSCFYVLFVQVVVLGFDGVSLISNGANGKHVNWFLLFVPXAQGLAWFVLSFSALQCKLKVSHKFPFLLRVWWLLSFVICLCNLYVDVRGLYMEGPKYLSTRVVANFAVXPALAFLSVVAIRGVTGIQVCVDPDLQEPLLVEEETGCLKVTPYKDAGIFSLATLSWLNPLLSVGAKRPLELKDIPLVAPKDRAKTSYKILNSNWERLKAENPSKQPLLAWAILKSFWKEAAVNAIFAGLNTLVAYVGPYMISYFVDYLGGIETFPHEGYVLAGIFFAAKLVETLTTRQWYLGVDILGMHVRSALTAMVYQKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKSVGIAAIATLIATIISIVVTVPVARIQENYQDKLMAAKDERMRKTSESLRNMRILKLQAWEDRYRIQLEEMRGTEYKWLRKALYSQAFITFIFWSSPIFVSAVTFATCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRITSFLQDEELQEDATIVLPPGMTDTAVEIKDGVFCWDPSLSRPTLSGIHMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGTAAYVSQSAWIQTGNIEENILFGNAMDKPRYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYVLTALAKKTVIFVTHQVEFLPAADLILVLKEGQIIQAGKYDELLQAGTDFKTLVSAHHEAIEAMDIPSHSDESDENMSPDRSIMTEKRSSASLDIDGLAKEVQEGSSDQKAIKEKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIMAQSLFQFLQIASNWWMAWANPQTAGDEPKVTPTELLLVYMALAFGSSLFIFVRAVLVATFGLAAAQKLFFSMLRSIFRAPMSFFDSTPSGRVLNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTTVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIVDDSRPPSSWPENGTIQIVDLKIRYKENLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSTGSIIIDNINISTIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDKAIWEALDKSQLGEVIRSKGQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDSATDNLIQKIIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVTEFDTPSRLLEDRSSMFLKLVSEYSSRSSGIPDF* 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0871 1531 SMART AAA_5 672 853 IPR003593 -
Amo12g0871 1531 SMART AAA_5 1311 1496 IPR003593 -
Amo12g0871 1531 Coils Coil 492 512 - -
Amo12g0871 1531 MobiDBLite consensus disorder prediction 877 894 - -
Amo12g0871 1531 CDD ABC_6TM_ABCC_D1 332 619 IPR044746 GO:0140359
Amo12g0871 1531 Pfam ABC transporter 663 797 IPR003439 GO:0005524
Amo12g0871 1531 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1285 1519 IPR003439 GO:0005524
Amo12g0871 1531 ProSitePatterns ABC transporters family signature. 770 784 IPR017871 GO:0005524
Amo12g0871 1531 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 87 1531 - -
Amo12g0871 1531 CDD ABCC_MRP_domain2 1283 1503 - -
Amo12g0871 1531 Gene3D - 1268 1520 IPR027417 -
Amo12g0871 1531 Gene3D ABC transporter type 1, transmembrane domain 927 1266 IPR036640 GO:0005524|GO:0016021
Amo12g0871 1531 Gene3D ABC transporter type 1, transmembrane domain 303 628 IPR036640 GO:0005524|GO:0016021
Amo12g0871 1531 MobiDBLite consensus disorder prediction 877 898 - -
Amo12g0871 1531 SUPERFAMILY ABC transporter transmembrane region 965 1271 IPR036640 GO:0005524|GO:0016021
Amo12g0871 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 867 IPR027417 -
Amo12g0871 1531 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1531 - -
Amo12g0871 1531 Pfam ABC transporter transmembrane region 977 1208 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g0871 1531 Pfam ABC transporter transmembrane region 335 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g0871 1531 CDD ABC_6TM_ABCC_D2 966 1260 IPR044726 GO:0140359
Amo12g0871 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1276 1516 IPR027417 -
Amo12g0871 1531 SUPERFAMILY ABC transporter transmembrane region 320 630 IPR036640 GO:0005524|GO:0016021
Amo12g0871 1531 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 611 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g0871 1531 Gene3D - 639 873 IPR027417 -
Amo12g0871 1531 Coils Coil 924 944 - -
Amo12g0871 1531 Pfam ABC transporter 1302 1450 IPR003439 GO:0005524
Amo12g0871 1531 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 645 868 IPR003439 GO:0005524
Amo12g0871 1531 CDD ABCC_MRP_domain1 645 845 - -
Amo12g0871 1531 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 968 1238 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0871 Amo-Chr12 19203501 19211517 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0871 616 861 Calmodulin-binding Proteins AT2G36910 30.943 5.20e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0871 - - gmx:100781010 2518.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0871 12 19203501 19211517 Amo12g0871 12 19203501 19211517 ECH
Amo16g1535 16 28383979 28391325 Amo12g0871 12 19203501 19211517 PCT
Amo06g0316 06 4605693 4613696 Amo12g0871 12 19203501 19211517 PCT
Amo12g0871 12 19203501 19211517 Amo16g1535 16 28383979 28391325 PCT
Amo12g0871 12 19203501 19211517 Amo06g0316 06 4605693 4613696 PCT