Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0863 ATGTTGGCGCACAAACCAGACATGTGGGGTCCACACATTTCTTTCCTCAACCTCTTCAATGTTCCTCTCTCTCTCTCTCTCCCCTTCATCCTCAGTTCCTCACACACCTATGACCTAACCAATTCTCATTTCTCTTCATTCATTCCTACTCAAGCAATCCTCCCCAAAAAAAAAAACACTTTTTTTCCCCTTACACCTTCATATTCTCATCCTCTCTTTTACATACACACCCCATCATCTTCTCCTTCTTCAATCTTGTTATTGAATCCATTAAGTTTCTACTTTTGTAAAATTCTGATGCAGGGTGTTACTATTATTCCTACTGGCGGTAGTGGTGGTGGTTCCACCATGTCTTCTACTTTGTCAAAGGAAGACACGAACTTGGTTCTTTCTTCTGAGGACTCTTCTTGCCCTGAAGATTCTGAGTTGCTTGAACTTGGTCTTGGATTAGGCCTATCTCATCATCATAAACCTGCTCCTAAATCACACAGTCATCATCATCATCATGCTAGAATTTTGACTGCTAAGGATTTTCCTTCTTCAGCTTCAGCTTCTTCCTCATCTTCATCTTCACCTCCTTCTTCTTCTTTGAGCAGGGTAAACAACACCACCACCACCTCCACTTCTGGCACCAAGAGAACTGCTGAGTCTGTTGCTGCTGCTAATAATGGACCTAGTCCGGTAGTTGGATGGCCTCCCCTCAGAAGACCATACAGAGTGAATAGCTTTAATCATTCAAAATCGCCAGCCACCGAGGTGTTCAACTCGAATTCTGAGAAGAGTAAGAGCAGCGAAACTGATGTGCTAAGGAAGAATGCTGATAATACCAATGGTAATAACAACAACATTGATACCAAAGAAAAAAGAAACTTCCGGAGTTCCTTGTTTGTCAAGGTAAATATGGACGGAATAGCAATTGGAAGGAAGGTCGATTTGAGTGTCCATAGTTCTTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAGAGAATCAACTACAGCAATCACTTTCAATGGATCAAACGGAGAAGACTTCGGTATTCTTGTTGGAGGAGATCAACACTCAAAATTGCTGGATGGATCTTCGAAGTTTGTGCTAACTTATGAAGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGCTCAGTGAGGAGGCTTAGAATCATGAGAACATCTGAGGCCAATGGAAATGGACTTGCACCAATGTTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 1272 0.4206 MLAHKPDMWGPHISFLNLFNVPLSLSLPFILSSSHTYDLTNSHFSSFIPTQAILPKKKNTFFPLTPSYSHPLFYIHTPSSSPSSILLLNPLSFYFCKILMQGVTIIPTGGSGGGSTMSSTLSKEDTNLVLSSEDSSCPEDSELLELGLGLGLSHHHKPAPKSHSHHHHHARILTAKDFPSSASASSSSSSSPPSSSLSRVNNTTTTSTSGTKRTAESVAAANNGPSPVVGWPPLRRPYRVNSFNHSKSPATEVFNSNSEKSKSSETDVLRKNADNTNGNNNNIDTKEKRNFRSSLFVKVNMDGIAIGRKVDLSVHSSYETLAQTLEDMFRESTTAITFNGSNGEDFGILVGGDQHSKLLDGSSKFVLTYEDKDGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGNGLAPMLEEKNCRQKSKPI* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0863 423 MobiDBLite consensus disorder prediction 178 286 - -
Amo12g0863 423 MobiDBLite consensus disorder prediction 241 262 - -
Amo12g0863 423 MobiDBLite consensus disorder prediction 111 136 - -
Amo12g0863 423 ProSiteProfiles PB1 domain profile. 294 401 IPR000270 GO:0005515
Amo12g0863 423 MobiDBLite consensus disorder prediction 178 221 - -
Amo12g0863 423 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 120 409 - -
Amo12g0863 423 SUPERFAMILY CAD & PB1 domains 288 397 - -
Amo12g0863 423 MobiDBLite consensus disorder prediction 270 284 - -
Amo12g0863 423 Gene3D - 289 408 - -
Amo12g0863 423 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 120 409 IPR003311 GO:0005634|GO:0006355
Amo12g0863 423 Pfam AUX/IAA family 145 404 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0863 Amo-Chr12 18880328 18884149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0863 257 403 B3 DNA Binding Superfamily AT1G59750 27.891 1.12e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo12g0863 AUX_IAA 1e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0863 K14484 - gmx:100527033 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0863 12 18880328 18884149 Amo12g0863 12 18880328 18884149 ECH