Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0835 TCGAAAATTACTTACTTGACAGAGAGCGAGTCTGTCGAAGATGGTTATAAATGGCACAAGTACGGAAAAAAATCACTCAAAAAGAGCCCTTTTCCAAATTGCAATGCGAAGAAGAGAATGGAGCGGTACGTGGATGATCCGACCCATGTCCTAACCACCTATGTGGGTTTGCACGCTCACGATTTGCCACCAATCCTCCCCGCTCCTTCAAGATCTTTCAACCTCTACAATAGCTCCACCGTTAGCCCCAAATTTAGTAGAGGAAGTGGTGTACAAAAACCTGTACTTTCAGATGCAGGTGCAGGTGCAAGGGAAAGAAAGCATGCCAATAACATTATTACTAGTGTTAATGTTAGAACTGATAGTGATAGTTGTGATAATGACGTTGCCTCGATTGAGGATATTGGTACCAGAGTGTTTGAGGATATTATTAATTTGTTGAAACTTCGAGCATCGACGATGGCATCGGTTGCTAATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCGAAAATTACTTACTTGACAGAGAGCGAGTCTGTCGAAGATGGTTATAAATGGCACAAGTACGGAAAAAAATCACTCAAAAAGAGCCCTTTTCCAAATTGCAATGCGAAGAAGAGAATGGAGCGGTACGTGGATGATCCGACCCATGTCCTAACCACCTATGTGGGTTTGCACGCTCACGATTTGCCACCAATCCTCCCCGCTCCTTCAAGATCTTTCAACCTCTACAATAGCTCCACCGTTAGCCCCAAATTTAGTAGAGGAAGTGGTGTACAAAAACCTGTACTTTCAGATGCAGGTGCAGGTGCAAGGGAAAGAAAGCATGCCAATAACATTATTACTAGTGTTAATGTTAGAACTGATAGTGATAGTTGTGATAATGACGTTGCCTCGATTGAGGATATTGGTACCAGAGTGTTTGAGGATATTATTAATTTGTCATCAATAGCACCTCATTATCAACATCATCAACCAACATCTCTATAG 1002 0.4152 SKITYLTESESVEDGYKWHKYGKKSLKKSPFPNCNAKKRMERYVDDPTHVLTTYVGLHAHDLPPILPAPSRSFNLYNSSTVSPKFSRGSGVQKPVLSDAGAGARERKHANNIITSVNVRTDSDSCDNDVASIEDIGTRVFEDIINLLKLRASTMASVANTMSMNNKRNKNNLSKITYLTESESVEDGYKWHKYGKKSLKKSPFPNCNAKKRMERYVDDPTHVLTTYVGLHAHDLPPILPAPSRSFNLYNSSTVSPKFSRGSGVQKPVLSDAGAGARERKHANNIITSVNVRTDSDSCDNDVASIEDIGTRVFEDIINLSSIAPHYQHHQPTSL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0835 333 SUPERFAMILY WRKY DNA-binding domain 177 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 2 63 - -
Amo12g0835 333 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 152 235 - -
Amo12g0835 333 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 63 IPR044810 GO:0003700
Amo12g0835 333 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 152 235 IPR044810 GO:0003700
Amo12g0835 333 Pfam WRKY DNA -binding domain 13 60 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 Pfam WRKY DNA -binding domain 185 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 SUPERFAMILY WRKY DNA-binding domain 5 63 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 ProSiteProfiles WRKY domain profile. 7 63 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 Gene3D WRKY domain 169 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 Gene3D WRKY domain 1 64 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 SMART WRKY_cls 12 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 SMART WRKY_cls 184 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0835 333 ProSiteProfiles WRKY domain profile. 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0835 Amo-Chr12 18207563 18211768 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0835 143 306 WRKY Transcription Factor Family AT2G37260 30.108 1.28e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo12g0835 WRKY 4.3e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0835 - K13424 adu:107473840 321.627