Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0792 ATGGAAACTGCACCCGCTTGCTTCTTCTGCGGTGGAATCCCTGCAACTGCAACTGCCACAGCGACATCAACTCCGAATTCTGTGCCTTTCCGTTGTGCCGTTAGAGTTCCCTTCTCTTCTTCGTTTGCCTCGCTCTGCCTGTTAGCTCGTACCAGGCACGGCGGCGGCGGCGGCGGCGCTTCTGTTTTCCGCTCTTTGTTCTCGTCGTCGTCTTCTTCGTCGGTCTCCGGCCTCGGCCTAATTCGAAGCGCCGCTAACAGCGAAACGAAGCTCCCGGCTCCAAGGAACGCTAAACGAAGTAGAAGAAGAACGCGGACGCCAACGGTTTCTCCTCCTACTCCTCGGCCTCCGTCTCCGGAGAAAACTAACAGTAACGGTAACGGTAACAGCAATGGGAATGGGGATCCTCTCGGGTGGAAGGATCTTGGGAAGAGTGTTGTGAGATGGATTAGGGAGAGCATGAGGGCCATGGCGTTGGATTTCGCGGCGGCGGAGTTGCAGGGGGAAGTGGAATTCGGGGAGTTGAGTCAGCGAATGGGACCTGGTCTGACTTTTGTGATCGAGGCCCAGCCTTATCTGAACGCTGTTCCGATGCCACTTGGGCTTGAAGTGATGTGCTTCAAGGCCTGCACACACTACCCAACTCTCTTTGATCACTTCCAGAGGGAGCTTCGGGAGGTTCTCCAGGACCTTCAGAATAAGTCCTTGCTACAAGACTGGCGCCAAACGCAGTCTTGGAAGCTGCTTAAAACTCTCGCCAATTCAGCTCAGCATCGAGCAGTGGCCAGAAAGATAGCCCATCCCCTGCCCAGGACTGTCCAAGGTGTTTTAGGAATGGACTTGGACAAGGTCAAAGCAATGCAGCAGAGGATTGAGGATTTCACCAACCGTATGTCTGAACTACTCCGTATTGAAAGGGATGCTGAATTGGAGTTCACTCAGGAGGAATTGGATGCTGTTCCTAGGCCTCTGGATGATGCTTCAGACCCCTCAAGACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGCAACTTAACTGCCATCAGTACCTCTACCGGACTTGGGGGAATGCATTTGGTGTTGTTCAAGGTTGAAGGCAACCATCGATTACCACCTACTACTCTTTCACCTGGAGATATGGTTTGTGTCAGAACATGTGACAGCAGGGGTGCAGTTACAACTTCTTGCATACAAGGATTTGTGAACAATCTTGGGGATGATGGCTGCAGTATTATTGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTTTCCAAACTATTCGGAAAGAGTGTGCGCATAGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGCGGAAGAAGAATCCTTCAATTGCTGTTGTAGCTACACTTTTTGGAGAAGAGGAAGATGTTGCATGGCTTGAGAAGAATAATTTTGTTGACTGGGAAGAAGAAAAATTAAATGGACTGCTAGAAAATGAAACATTCGATAGTTCTCAGCAGCGAGCAATTGCATTGGGTTTGAATAAGAAGAGACCTGTATTGGTTATCCAAGGGCCTCCGGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGTATGTGCCGTTCAACAAGGTGAAAGGGTTCTAGTGACGGCACCTACGAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTCCGAGTTGGAAATCCTGCTCGTATTTCAAAAGCTGTGGGATCAAAGTCTTTAGGTGCAATTGTAAATGCAAAGCTTGCAAGTTTTCGAGAAGAGTATGAAAGGAAAAAGTCAAATCTAAGGAAGGATCTAAGACTTTGTTTAAAGGACGATTCACTAGCTGCAGGCATACGGCAACTTCTGAAACAGCTGGGAAGGTCTCTCAAGAAAAAAGAAAAACAGACTATGAATGAAGTTTTATCTAGTGCGCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGATCCCTTGATTCGAAGGCTAGATGCTTTTGACCTGGTTGTCATAGATGAAGCAGGACAAGCAATTGAACCATCTTGTTGGATTCCTATATTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTGTCCAGAAAGGCCTTAGAAGGTGGCCTAGGAATATCACTACTGGAGAGAGCTACAGCATTGCACGAAGGGATTCTAACCACCAGGCTAACAACACAATACCGTATGAATGATGCAATTGCTAGTTGGGCCTCAAAGGAGATGTACGGAGGATTGTTGAAGTCTTCTGAGTCTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACCCAATGTCCACTGCTATTGCTTGATACAAGAATGCCATATGGAAGTCTGTCGGTTGGTTGCGGAGAGCATCTGGATCCAGCAGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGATATAGTTCTGCAGCACGTCGTTTCCTTGGTTTATGCTGGTGTTAACCCAGCTGCCATTGTGGTGCAGTCCCCTTATGTCGCTCAAGTGCAGCTTCTGAGGGACATGCTTGATGAGGTACCTGAAGCTTCTGGTACTGAGGTTGCAACCATTGATAGTTTTCAAGGTCGCGAAGCTGATGCAGTAATTTTATCCATGGTACGGTCAAACACATTGGGAGCTGTTGGATTCCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACAAGGGCACGCAAACATGTAGCCGTGGTCTGTGACAGCTCAACAATATGCCACAACACCTTCCTGGCAAGACTTCTGCGTCACATTCGACACTTTGGTCGGGTGAAGCATGCAGAACCAGGTAGTTTTGGGGGTTCTGGACTAGGGATGAACCCCATATTACCCTCCATTAATTAG 2970 0.4758 METAPACFFCGGIPATATATATSTPNSVPFRCAVRVPFSSSFASLCLLARTRHGGGGGGASVFRSLFSSSSSSSVSGLGLIRSAANSETKLPAPRNAKRSRRRTRTPTVSPPTPRPPSPEKTNSNGNGNSNGNGDPLGWKDLGKSVVRWIRESMRAMALDFAAAELQGEVEFGELSQRMGPGLTFVIEAQPYLNAVPMPLGLEVMCFKACTHYPTLFDHFQRELREVLQDLQNKSLLQDWRQTQSWKLLKTLANSAQHRAVARKIAHPLPRTVQGVLGMDLDKVKAMQQRIEDFTNRMSELLRIERDAELEFTQEELDAVPRPLDDASDPSRPIEFLVSHSQPQQELCDTICNLTAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCIQGFVNNLGDDGCSIIVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGEEEDVAWLEKNNFVDWEEEKLNGLLENETFDSSQQRAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKAVGSKSLGAIVNAKLASFREEYERKKSNLRKDLRLCLKDDSLAAGIRQLLKQLGRSLKKKEKQTMNEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATALHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSESVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCGEHLDPAGTGSFYNEGEADIVLQHVVSLVYAGVNPAAIVVQSPYVAQVQLLRDMLDEVPEASGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGSGLGMNPILPSIN* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0792 989 Coils Coil 616 636 - -
Amo12g0792 989 Gene3D - 336 449 - -
Amo12g0792 989 Pfam AAA domain 515 731 IPR041677 GO:0004386
Amo12g0792 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 952 IPR027417 -
Amo12g0792 989 SMART AAA_5 530 745 IPR003593 -
Amo12g0792 989 MobiDBLite consensus disorder prediction 120 134 - -
Amo12g0792 989 SMART ultradead3 511 763 IPR014001 -
Amo12g0792 989 CDD SF1_C_Upf1 765 961 IPR041679 -
Amo12g0792 989 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 120 989 - -
Amo12g0792 989 MobiDBLite consensus disorder prediction 86 139 - -
Amo12g0792 989 Coils Coil 284 311 - -
Amo12g0792 989 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 120 989 - -
Amo12g0792 989 Pfam AAA domain 741 944 IPR041679 -
Amo12g0792 989 Gene3D - 298 747 IPR027417 -
Amo12g0792 989 CDD DEXXQc_SMUBP2 515 764 - -
Amo12g0792 989 Gene3D - 763 971 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0792 Amo-Chr12 17060904 17067421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0792 501 704 Core DNA Replication Machinery Family AT1G08840 26.699 1.73e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0792 - - aip:107625008 1833.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0792 12 17060904 17067421 Amo09g1353 09 40186251 40188159 hybridization