Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0791 ATGAGGTGCCTACAGTCTGGGGAGCCATTAGGAAGAGCAGTTGAAATGGTTCCATCGTCAGAATCTGTTGCGACCAGTGACTGCTCAGCAAGTGGTCATTCTTGCCTTGGTGGACAAATTGGCAACAAGAAGCCTGACACTGGCAATATAGAGGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATATCAGAAGGGAAATTTAGTAGCGGCTTTACATGTCTTTGAAGGAATAGATATAGTTTCTGTGACTCCCAAGATTAAAGATGCCCTTTCCAAAAGCCGAGAACGGCGTAAGAGACATTCCCAGAATAATGATGAACCGCAAATGTCTGTACATGCTGTTGCCTTATTGTTGGAAGCTGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGCAAGGCAGTTGAGCTACTTCCGGAATTATGGAAACTTGCTGATTGTCAACGAGAAGCTATTTTGTCTTACCGGCGAGCACTCCTTCATGAATGGAATCTTGATGCAGAGACGATAGCGAAGATTCAGAAAGAATTTGCTCTTTTTCTTCTATATAGTGGCGGAGAAGCAATGCCACCTGATCTTCGTTCCCAAATGGACGGATCGTTTGTGCCTAGAAACAACATTGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCCTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCTGGAGATTTGATGATTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGACTATCCATCGAAAGGAGAGGTTCTATGCTTTAGCTCTTTGTTATTACGGAGCAGGGAAGAACGTGGAAGCGCTGGATCTTCTTAGAAAACTGCTGAGTCATAGAGAGGACCCAAGACATGTTCCAAGTTTGTTAATGGCTTCTAAGATTTGTTGCGAAAACTTCAGTGTTACAAAAGACCCTGGGGTAAGCTTTGCTCGGATGGCACTTGAGAACTTGGTTGGAAGATGTAATCAGTTAGAAAATATGGCCAATTTCTTACTTGGTGTTTCACTTTCTGCATACTCGAAATTGGCCATTTCTGATGCTGAGAGGGTTAAGAGACAATCTGAAGCACTTCATACCCTTGAAACTGCCTGCAAATTGAGCAGAATGGAAGACCCTGTTGTATTATACCATCTGAGTTTAGAATATGCTGAGCAACGGAAGTTGGATGCTGCACTTCATTATGCTAAGTGCATTGTAAAACTTGAAGTTGGCTCTAATGTTAAAGGTTGGTTACTGTTATCTAGGGTATTATCCGCACAAAAGCGGTTCTTGGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTACGAACAAAGGCGAAACTTCAGATTGCTCAGGGCCAGTTAAAGAGTGCCATTGAGACGTACACTCAGCTTCTTGCTGTTCTTCAAGTTCATAGTAAAAGTTTTGGTTCTCGGAATAAGCTATTTAAGGACAAAAGAGATCAGATTAGGAATTTGGAAGTTGAAGTATGGCATGATCTTGCTTATGTATACATCAGTCTTTCACAGTGGCGTGACGCAGAGGCCTGCCTTTCAAAATCTCGGGCCATCAAACTATACTCTTCTACTAGATGTCATGCAATAGGTAAAATGTATGAAGCAAAAGGTCTTTACAAGGAGGCTCTAAAAGCATTCCGCGATGCCCTGGACATTGATCCTGACCATGTCCCCAGCTTGATCTCCACTGCCATGGTTCTTAGACATTGCAGTGATCAATTGAATCCTGCAGTCAGAAGCTTTTTGATGGACGCACTGCGGCACGACAGATTTTGTGCTTCTGCTTGGTATAATCTTGGCCTTCTCCACAAGGCTTACGGTACAGAATCAGCATTTGTTGAAGGTGCAGAATGTTTTCAGGCAGCACACTCTCTTGAAGAATCTGAACCAGTTGAACCTTTCAGATGA 2145 0.4228 MRCLQSGEPLGRAVEMVPSSESVATSDCSASGHSCLGGQIGNKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIVSVTPKIKDALSKSRERRKRHSQNNDEPQMSVHAVALLLEAVFLKAKSLQVLGRFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCQREAILSYRRALLHEWNLDAETIAKIQKEFALFLLYSGGEAMPPDLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLMILANQLEELLPGTIHRKERFYALALCYYGAGKNVEALDLLRKLLSHREDPRHVPSLLMASKICCENFSVTKDPGVSFARMALENLVGRCNQLENMANFLLGVSLSAYSKLAISDAERVKRQSEALHTLETACKLSRMEDPVVLYHLSLEYAEQRKLDAALHYAKCIVKLEVGSNVKGWLLLSRVLSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLKSAIETYTQLLAVLQVHSKSFGSRNKLFKDKRDQIRNLEVEVWHDLAYVYISLSQWRDAEACLSKSRAIKLYSSTRCHAIGKMYEAKGLYKEALKAFRDALDIDPDHVPSLISTAMVLRHCSDQLNPAVRSFLMDALRHDRFCASAWYNLGLLHKAYGTESAFVEGAECFQAAHSLEESEPVEPFR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0791 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Amo12g0791 714 SUPERFAMILY TPR-like 513 686 IPR011990 GO:0005515
Amo12g0791 714 Gene3D Tetratricopeptide repeat domain 396 548 IPR011990 GO:0005515
Amo12g0791 714 Gene3D Tetratricopeptide repeat domain 549 711 IPR011990 GO:0005515
Amo12g0791 714 SUPERFAMILY TPR-like 319 540 IPR011990 GO:0005515
Amo12g0791 714 SMART tpr_5 318 351 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 133 166 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Amo12g0791 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Amo12g0791 714 Gene3D Tetratricopeptide repeat domain 41 395 IPR011990 GO:0005515
Amo12g0791 714 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 714 - -
Amo12g0791 714 Pfam Tetratricopeptide repeat 605 635 IPR013105 -
Amo12g0791 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0791 Amo-Chr12 17046077 17053884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0791 1 714 Calmodulin-binding Proteins AT4G28600 57.931 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0791 K21843 - gmx:100800762 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1497 16 27453355 27459976 Amo12g0791 12 17046077 17053884 PCT