Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0777 ATGGATTCGGCGAGGAGTTGGTTTCAGAAGTTTCAGCCTCGTGATAAAACAAAAGGGTTTGGAAAGAAGAAGGAGGATGATAACAACGGAGGAGGAGCAGACGATTCGAGTGTAGTGGTTGATGAAGCTTCTCTTTCCAATGACACAAAGCAGAAGGTTGCAGCAGCAAAGCAGTATATTGAAAACCATTACAAGGAGCAAATGAAGAATCTTCAGGAGAGGAAGGAGCGTCGTACCTTTTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGATCAAAACAACCTACTTAAATTTTTGGAAAAAAAGGAAACTGAATATATGCGCCTTCAAAGGCATAAGATGGGAGTTGATGATTTTGAATTGCTGACTATGATTGGCAAAGGTGCATTTGGTGAGGTCAGAGTCTGTAGGGAAAAGACTACGGGTCAGGTTTATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCAGAGCTGAAAGGAATCTACTTGCTGAGGTTGACAGCAATTGCATAGTCAAACTGTATTGTTCTTTTCAGGATGATGAGCATCTATATCTTATTATGGAGTACCTTCCAGGTGGGGATATGATGACACTGCTTATGAGAAAGGATACCTTGACAGAAGATGAAGCCAGATTTTATGTAGCAGAAACAATTCTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATCAAGCCTGACAACTTAATACTGGATAGATATGGACACTTGAGACTGTCTGATTTTGGACTTTGTAAACCATTAGATTGTAGTACAATTGCAGAAGGGGATTTTTCTGTGGTTCCGAATGTGAATGGATCTAATGAACGTGTTATTTCAAAACGCACACAGCGAGAACAATTACAACACTGGCAACAGAACAGGAGGACACTTGCTTATTCCACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAGATGCTGGTAGGATATCCACCATTTTATTCTGATGATCCGATGACAACATGTAGGAAGATAGTAAACTGGAGATCTCACTTGAAATTTCCCGAAGAAGCAAGGCTGTCCCGAGAGGCTAAAGATCTAATTTGTAAACTTCTGTGCAATGTAAACCACAGGTTGGGGTCCAAAGGTGCAGATGAAATAAAGGCTCACCCATTCTTCAATGGTGTTGAATGGGATAAGCTGTATCAAATAGAAGCTGCATTTATTCCAGAAGTAAATAATGAGCTAGATACTCAGAACTTTGAGAAGTTTGAAGAGTCAGACATCCAAACTCAATCATCATCAAGACATGGTCCGTGGAGGAAGATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGACTATCAAGTTCCTGGGATGGCTGAACTAAAGAGGAAACAGAACAAAACAAATAGGCCATCCATTAAGTCACTCTTTGAGTCTGATTCAGAGATATCAGAATTATCTGAAGTTCCTGAAACATCTTCAACCAGACAATCTTCTCAAGGAAGCTTTATGAAGCTCTTGCCACCCCAATTAGAGGTATCTAACAGTGAGAAGAGGATTTCTCCTAAGTCATAA 1683 0.3969 MDSARSWFQKFQPRDKTKGFGKKKEDDNNGGGADDSSVVVDEASLSNDTKQKVAAAKQYIENHYKEQMKNLQERKERRTFLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEHLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAETILAIESIHKHNYIHRDIKPDNLILDRYGHLRLSDFGLCKPLDCSTIAEGDFSVVPNVNGSNERVISKRTQREQLQHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWRSHLKFPEEARLSREAKDLICKLLCNVNHRLGSKGADEIKAHPFFNGVEWDKLYQIEAAFIPEVNNELDTQNFEKFEESDIQTQSSSRHGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKRKQNKTNRPSIKSLFESDSEISELSEVPETSSTRQSSQGSFMKLLPPQLEVSNSEKRISPKS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0777 560 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Amo12g0777 560 MobiDBLite consensus disorder prediction 9 31 - -
Amo12g0777 560 Gene3D Phosphorylase Kinase; domain 1 93 446 - -
Amo12g0777 560 SMART serkin_6 122 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0777 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo12g0777 560 CDD STKc_NDR_like 120 481 - -
Amo12g0777 560 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo12g0777 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 527 - -
Amo12g0777 560 ProSiteProfiles Protein kinase domain profile. 122 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0777 560 Coils Coil 64 84 - -
Amo12g0777 560 Pfam Protein kinase domain 123 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0777 560 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Amo12g0777 560 MobiDBLite consensus disorder prediction 1 51 - -
Amo12g0777 560 MobiDBLite consensus disorder prediction 500 560 - -
Amo12g0777 560 MobiDBLite consensus disorder prediction 506 541 - -
Amo12g0777 560 Gene3D Transferase(Phosphotransferase) domain 1 206 437 - -
Amo12g0777 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Amo12g0777 560 SUPERFAMILY Protein kinase-like (PK-like) 95 471 IPR011009 -
Amo12g0777 560 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0777 Amo-Chr12 16677918 16686003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0777 1 513 AGC Kinase Gene Family AT2G20470 80.154 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Amo12g0777 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0777 K08790 - gmx:100779528 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0777 12 16677918 16686003 Amo12g0777 12 16677918 16686003 ECH
Amo12g0777 12 16677918 16686003 Amo09g1122 09 28651415 28653774 hybridization
Amo12g0777 12 16677918 16686003 Amo16g1478 16 26989652 26993782 PCT