Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0762 ATGGATATGAAACGAAGGCTAAACAACAACAACAATGACAATAACGACAATGACATGGACCTCCGAAGAGGTCCATGGACCGTCGACGAAGACCTTACCCTCATCAATTACATTGCCAATCACGGCGAAGGTCGCTGGAATTCTCTTGCCCGCTCTGCCGGACTGAAACGAACCGGGAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGCCCAGATGTTAGACGTGGTAACATCACTCTTGAAGAACAGCTTCTTATTCTTGAGCTCCATGCTAGTTGGGGAAACAGATGGTCGAAAATTGCTCAATACCTACCTGGAAGAACTGACAACGAGATCAAGAACTATTGGAGAACTCGTGTTCAAAAGCATGCGAAACAACTCAAATGTGATGTAAATAGCAAGCAATTCAAGGACACCATGCGCTTCCTTTGGATGCCAAGACTAGTGGAACGGATACAGGCGGCCGCAGCAACGGTTACAACTGCTGCGACCGCCGCTCCCAATTCTCCGACTTTATCAGCTACTAAATCAGTCACTATTATCAACAACAATAATACTACTACAGCGTACAACTTCGACAACCTTAACAACAAAAACAACTTGGAGGTTCATGGTGGAAACATTATGAATATGAGCAACAACAACTTTGGCTATGCTACTCCATCAGAGAATAGTAGCACAGGAACATCATCAGATTCGTTTGTCACACAAGATTGTTACAACAATAATAATAATGTTCATGTTGGTAACAACAACAATGACCCTAGTTCGGATTATTACCATCAACAAGGAAATAACAACAACCAAGTTAGCTTCATGGATTGCATCACTAGTCCATCCTCCATGTCATTGTTCCCACATCAAGAGATGGATTTCCAAGCCATGGAATTACCAAACACCCCTTGGATTAATAATCCCTCTACATTCAGCAATTTCTGGAATGATGAAAACATGTTGCTTCTACAAAATCTAGGATGTGGTGGTGACAACATGTGA 999 0.4244 MDMKRRLNNNNNDNNDNDMDLRRGPWTVDEDLTLINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHASWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQAAAATVTTAATAAPNSPTLSATKSVTIINNNNTTTAYNFDNLNNKNNLEVHGGNIMNMSNNNFGYATPSENSSTGTSSDSFVTQDCYNNNNNVHVGNNNNDPSSDYYHQQGNNNNQVSFMDCITSPSSMSLFPHQEMDFQAMELPNTPWINNPSTFSNFWNDENMLLLQNLGCGGDNM* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0762 332 SMART sant 22 72 IPR001005 -
Amo12g0762 332 SMART sant 75 123 IPR001005 -
Amo12g0762 332 CDD SANT 96 119 IPR001005 -
Amo12g0762 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Amo12g0762 332 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Amo12g0762 332 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 325 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo12g0762 332 Gene3D - 80 142 - -
Amo12g0762 332 Gene3D - 20 76 - -
Amo12g0762 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Amo12g0762 332 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Amo12g0762 332 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Amo12g0762 332 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Amo12g0762 332 MobiDBLite consensus disorder prediction 1 22 - -
Amo12g0762 332 CDD SANT 25 70 IPR001005 -
Amo12g0762 332 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Amo12g0762 332 PANTHER MYB TRANSCRIPTION FACTOR 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0762 Amo-Chr12 16297178 16299300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0762 19 219 MYB Transcription Factor Family AT1G48000 59.701 3.20e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g0762 Myb_DNA-binding 3.4e-15 CL0123