Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0756 ATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCGCAGCTTCCAAATAAAACTGAGCATGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCTTATAGAGCATTTTTGGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATATGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAGGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGATTGTAGCTCAAGTGCTCAATGCTTGGAAGGAACAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTCGACATTCTTGAGAATTTTTTATCTACTTCTGGTCATATGTATCGGAGAATGGATGGTCTTACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTTAATGCCTCAAATGATATATTTATTTTTATTCTAACAACCAGAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTGTATAGGTTGATCACACGAGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTCAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACATTGAATGTGGATGGAGAAACTGGGTCTACTGAAACATCAAATATTTTCGGCCAAATATCTGAAGAAGTAAATATGGTTGGGACACACACAAACAACCAGGAGAATAATAAATTTAGCAAGACTACTGAACCGGTTTCTGAAGATGTTGCAGCTGATAATGATGACCAATCACAGAGCGGATCTCCGAATGGAAAGGGCAAAGGGAAAGCGGAACATGGTGACGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGGATACATAGTGCCTTGAACCATGATATGATCATGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGCCACGACAGCGTCTCTGTTCCTACATGGACAGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTTGGTTCAACTGTGAATACCCAGTTGATAAAAAATAACAAAGCATCTGATGGATCACCCAACAATGGAACTAAAAAATTGAATGGATTTGCTGCTGGAGCGATGTCCGGGAAGGCATTATCTTCTGCTGAACTTTTGGCAAGAATTCGAGTTAACCAAGATAATGCCATTGGTGCTGGCCTCGAACATCAATTTGGTACAAGCTCAAGTTCAATTAATCAAGCAAGATCTACAGATGTCAGATCTTCTAGAGCTTCTGAAAATATGTCTGGCTCGCAACCTGAAGTATTAATTCGTCAGATATGTACATTTCTACAACAGCATGGCGGCAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATACCCTCCAAAGATCTTGCTTTATTCAAGAATCTGTTAAAGGAAATAGCTACTCTGCATAAAGGGCCTAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 1731 0.4142 MPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASGNPDYGNPERSGKMKIVAQVLNAWKEQGHRVLLFTQTQQMLDILENFLSTSGHMYRRMDGLTPVKQRMALIDEFNASNDIFIFILTTRVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNMVGTHTNNQENNKFSKTTEPVSEDVAADNDDQSQSGSPNGKGKGKAEHGDGVDEETNILKSLFGANGIHSALNHDMIMNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNTQLIKNNKASDGSPNNGTKKLNGFAAGAMSGKALSSAELLARIRVNQDNAIGAGLEHQFGTSSSSINQARSTDVRSSRASENMSGSQPEVLIRQICTFLQQHGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0756 576 Pfam Helicase conserved C-terminal domain 91 203 IPR001650 -
Amo12g0756 576 MobiDBLite consensus disorder prediction 286 300 - -
Amo12g0756 576 MobiDBLite consensus disorder prediction 286 332 - -
Amo12g0756 576 MobiDBLite consensus disorder prediction 485 508 - -
Amo12g0756 576 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 463 - -
Amo12g0756 576 Coils Coil 366 386 - -
Amo12g0756 576 Pfam SNF2-related domain 2 71 IPR000330 GO:0005524|GO:0140658
Amo12g0756 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 94 253 IPR001650 -
Amo12g0756 576 PANTHER SNF2/RAD54 FAMILY MEMBER 1 463 - -
Amo12g0756 576 MobiDBLite consensus disorder prediction 395 415 - -
Amo12g0756 576 CDD SF2_C_SNF 89 214 - -
Amo12g0756 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 266 IPR027417 -
Amo12g0756 576 Gene3D - 13 308 IPR027417 -
Amo12g0756 576 SMART helicmild6 120 203 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0756 Amo-Chr12 16055919 16058669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0756 89 257 RAD5 or RAD16-like Gene Family AT5G22750 32.544 2.90e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo12g0756 Helicase_C 2.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0756 K10841 - gmx:100820025 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0756 12 16055919 16058669 Amo12g0756 12 16055919 16058669 ECH