Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0739 ATGGGTCTTAGAGATATTGGTGCTTCATTGCCACCTGGGTTTCGGTTCTATCCAAGTGATGAAGAATTAGTTCTTCACTATCTTTACAAGAAGATCACAAATGAGGAAGTTCTCAAGGGTACTTTGATGGAAATTGATTTGCACACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAATGGTACTTCTTCAGCTTCCGTGACCGCAAATACGCCACCGGGTTTCGCACCAATCGCGCCACGACATCTGGCTATTGGAAAGCGACCGGCAAGGATCGTACGGTTCTCGATCCCCTCACCCGCGAGGTCGTAGGGATGCGGAAGACTTTGGTGTTCTACAAGAATAGAGCCCCAAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCACCTAAGGAGGATTGGGTTTTGTGTAGAGTGTTTCACAAGGGCAAAACAGACAATAGTGCCAAACTAAGCCCACAATTCATGTATGAGGCCACACCTTCATCCCTAACTTTGGCTTCATCATCATCATCCCCACCAACAAACCAAACAAATTGCAACAATTTGCATGTTATTGGGTATAACCAACTTCCCAATTTCTCATCATCATCATCACCAATGGCAATCCACCATAATCATCATCATCATCATCATCATCAAAACCAAAACGGTTCTTCCTCTTTGATGAATCTCCTTCAATTTTCCACTAAGGAAAATAGTACCATTACTCAACTAAGTCCCAAAGGTGGCGGTGGCGGTGACGACGGCGGCTATGGGTTCATGTGGGACATGGATCTTGAGGAAAATAGCTTCCATGATGGTGGGGTTATTGCATCAAACTTGAACGACATGAGATTTGAGGTTGATAATAACACTATGGTTATGTTGTAG 915 0.4481 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPLTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTDNSAKLSPQFMYEATPSSLTLASSSSSPPTNQTNCNNLHVIGYNQLPNFSSSSSPMAIHHNHHHHHHHQNQNGSSSLMNLLQFSTKENSTITQLSPKGGGGGDDGGYGFMWDMDLEENSFHDGGVIASNLNDMRFEVDNNTMVML* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0739 304 MobiDBLite consensus disorder prediction 211 233 - -
Amo12g0739 304 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Amo12g0739 304 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Amo12g0739 304 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 300 - -
Amo12g0739 304 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Amo12g0739 304 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Amo12g0739 304 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0739 Amo-Chr12 15587849 15594524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0739 6 156 NAC Transcription Factor Family AT1G56010 58.491 8.06e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo12g0739 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0739 - - aip:107625035 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0739 12 15587849 15594524 Amo12g0739 12 15587849 15594524 ECH
Amo16g1464 16 26594558 26596390 Amo12g0739 12 15587849 15594524 PCT
Amo06g0277 06 3760339 3764186 Amo12g0739 12 15587849 15594524 PCT
Amo12g0739 12 15587849 15594524 Amo16g1464 16 26594558 26596390 PCT
Amo12g0739 12 15587849 15594524 Amo06g0277 06 3760339 3764186 PCT