LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g0732	ATGCATATAGGTCAAACAGATACAACTTCAGTGAAATGTCTAATCAACAGCATATCTCGATTCCTTCATCTGGTCTCTTGCCAAATCGTGAAGCCTGCGCCTTTTCAGAAGATCTGTCATAATATGGTCGGGGTGTTAAAGCGACTGAAGCCAGTGCTTGATGATGTAATGGACTACAAACTCCCATTTCACCAAAATATGTCTAAAGAGTGTGAAGAATTGGATGTGCGGATCAATGAAGCTAGAGACTTCATCGAAAAATGGGGTCCAAAGATGAGCAAGATTCTTAGTGTTATTCAAAGCAGCACATTGTTGATTAAGTTGCAGAGCACATCACTTGACATATGTCACATGATAGTTAGATCCCTACAGTCACCTCCATCTGCTTCGGTTTTGGCTAATCTTCAGAACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTTTATATAGAAGAAGCACTAAGAAACCAGAGAGATAATGTTCAACCTTCCAACGAGCTTCTGAAGGAAATTGCCGAGTTACTAAAATTGACATCAAACGAGGAGCTCTTGAAAGAAAGTATCGTCGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAAGGGGACTTGGATGAAATTAATGAAATTGTGAATCTTGTCCGCAATTTACGCGATTATGTAATGAGAACTGAGTCCCTTGAAGTCAAAACTGGTCTCTCAATCCCTCCATACTTCCGCTGCCCTTTATCATTGGAACTCATGATGGATCCTGTTATTGTGGCTTCGGGTCAAACATATGACAGGCAATCAATCCAAAAGTGGCTAGATAACGGGCTAAATGTTTGTCCCAAGACTCGTCAGAAGCTCAATCATATGAATCTTACTGCCAATTATACCGTCAAAGCTATGATTGCAAATTGGTGTCAGGAAAACAGTGTCAAGCTTTGTAGTAACTCGCTGCTCGATAAATCCTCTTGTATCACAACCCCTGCAGATCATTCATTGCCTCATGATTTAGCTAATAAATGTGGTTTCAAGTCTATGAATATTGATTCCATCTCAAGGTCATCTCTTCAAAATGGAAATGGAAATGAGAAACCAAATGGTGATAATTTTGTCAGATCAAGTGAAGAGTATAATGGATGCCGGAGCGGAACAGTGGAAAGATGTGATCAGCAATCATCCGATGTTCACAGCAGAAGTGAATCATCATTTTCAAGTTCAATATCTAGTACTGATTGCATACTTCCAGTTTCAGGACAGGCGTCCGGAATATCCGATAAGCCGCAAAATGTTGACAATGTTGTTGGGAACAAACAAAGTCCTGCATCGAGAATCCAAGGGACGAGAAATGGTAATATTGTTATGAACAATAATAACATTAATACTAGTGCTAAGCAAAATGATTCAAGAGTTGATTCACATCCTATATTGAACTCGGGGGCCAGTGAAGTGGCCACTTCATCTCATATTAATAAGTTGATCGAAGAACTTCGCAGCCAATCAGTTGAAGTGCAAACCATGGCTGCAGAAGAATTGAGGCTTCTTACAAAGAATGACATGGAAAACCGAATTATTGTGGGGCGGTGTGGGGCTGTTGAGCCTTTACTTTCGCTTCTGTATTCGGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTGTTAAATTTGTCAATCAATGAAGATAACAAGACTTTGATTATGGAAGCTGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATGGTGCCAAAGAAAATTCTGCGGCAGCACTATTCAGCCTCTCTGTAATAGAAAACAACAAAGAAAAAATCGGCCGATCCGGCGCAGTCAAAGCCTTGGTGGATCTTCTTGCCTGGGGAACTCTTAGAGGGAAAAAGGATGCTGCTACTGCTTTATTTAACTTGTCAATATTTCATGATAACAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCGGTTGATGGACTCTGCCGATGGAATGGTTGACAAGGCTGTTGCACTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGGATAGAAATCGCAAGGGAAGGAGGCATCCCCTTATTAGTTGAAATTGTTGAAACAGGTTCACATAGGGGAAAGGAGAATGCTGCTTCTGTTCTGTTACAGTTATGCCTTCATAGTACCAAGTTTTGTATTCTTGTTTTGCAAGAAGGAGCTGTACCTTCCCTAGTTGCATTATCTCAATCCGGTACGCCGAGAGCCAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGCAATCAGCGCGAAGGAGCTGCCGCGAAAGGAAAATCGTGA	2331	0.4127	MHIGQTDTTSVKCLINSISRFLHLVSCQIVKPAPFQKICHNMVGVLKRLKPVLDDVMDYKLPFHQNMSKECEELDVRINEARDFIEKWGPKMSKILSVIQSSTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQNYIQELQCLKKETAMVYIEEALRNQRDNVQPSNELLKEIAELLKLTSNEELLKESIVVEKERLNAEVNKMKGDLDEINEIVNLVRNLRDYVMRTESLEVKTGLSIPPYFRCPLSLELMMDPVIVASGQTYDRQSIQKWLDNGLNVCPKTRQKLNHMNLTANYTVKAMIANWCQENSVKLCSNSLLDKSSCITTPADHSLPHDLANKCGFKSMNIDSISRSSLQNGNGNEKPNGDNFVRSSEEYNGCRSGTVERCDQQSSDVHSRSESSFSSSISSTDCILPVSGQASGISDKPQNVDNVVGNKQSPASRIQGTRNGNIVMNNNNINTSAKQNDSRVDSHPILNSGASEVATSSHINKLIEELRSQSVEVQTMAAEELRLLTKNDMENRIIVGRCGAVEPLLSLLYSDMKITQEHAVTALLNLSINEDNKTLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSGAVKALVDLLAWGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKFLVRLMDSADGMVDKAVALLSNLSTIPEGRIEIAREGGIPLLVEIVETGSHRGKENAASVLLQLCLHSTKFCILVLQEGAVPSLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS*	777

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g0732	776	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	613	655	IPR000225	GO:0005515
	Amo12g0732	776	ProSiteProfiles	U-box domain profile.	240	314	IPR003613	GO:0004842\|GO:0016567
	Amo12g0732	776	Gene3D	-	440	565	IPR011989	-
	Amo12g0732	776	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	572	614	IPR000225	GO:0005515
	Amo12g0732	776	PANTHER	U BOX DOMAIN-CONTAINING	11	771	-	-
	Amo12g0732	776	SMART	Ubox_2	244	307	IPR003613	GO:0004842\|GO:0016567
	Amo12g0732	776	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	654	695	IPR000225	GO:0005515
	Amo12g0732	776	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 3	11	771	-	-
	Amo12g0732	776	SMART	arm_5	683	723	IPR000225	GO:0005515
	Amo12g0732	776	SMART	arm_5	602	642	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g0732	Amo-Chr12	15247692	15252318	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g0732	7	774	U-box Gene Family	AT5G67340	38.918	2.05e-168	501

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g0732	-		-	gmx:100800949	1090.49

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g0732	12	15247692	15252318	Amo12g0732	12	15247692	15252318	ECH

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