Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0731 ATGGAGAATGGTAGTGAAATGATAAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGGATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGACGGCTTGCTGAAAAAGGCAAATGAATTAAAATCTTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCCAGTGGGAAAGCCTATTACTATGGCGATTCTTCGTTAAAGACAATGAACATGGCTCTCTCAAACGAACAACAACCTCAAGGTAGTAATCAGTTCCTTGGTTACATCATGGAGGGAATGTCTAGGATGGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGCTGAGAAAGAACGAGCCAAAACTTTTTCTAGAATTTTAAAGACAATTAAAAATGACAACATCACCAATTGGTGGGATATGATTGGTCAAAGTTGTGAAAAAGATAAAGAGATAGAAGAAATTCTTGTAGTTCTTCAGCAGACTTTAAAAAATCAAATTTCACTCAAAATTGTTGCAAATCAGGTTGCAGTTACGACTGTAGCTGAGAGTGTGGCATCTATATTTTATGACGGTGATCAAACCATGGATCAAGTTAATCCTGAAGTTATTGGATCATACCCTACTCATGGAAGTATGAGTACTTTTTCCAACATAGCATTTGCTACTGGTGTCAACCCTTTTGACGCTATGAGAGAATTGGATGACCAAAGTACCCCTGTTTGGTATCCATCATACCAACACCAACAAGGATATAATGGTCTATTTCTCTACGATGTAAATAACAGGAATGGTGTTGGGAGAAACAGCGGCGACGACGATATTGGAAATCATTTTTACCATTCAAATTCTAACCATAACAATGGTGGAGGCTTTTTTGATTTTCTATACCAAAATAATCCATTTAACAATGGTTATGGTCGTGGAGGATTCTTCTAA 957 0.3553 MENGSEMIKKTKGRQKIEIKRIENKKNCQIAFTKRKDGLLKKANELKSLCDAGVDLIIYSSSGKAYYYGDSSLKTMNMALSNEQQPQGSNQFLGYIMEGMSRMDMQNLIKKNDSLVDRLNAEKERAKTFSRILKTIKNDNITNWWDMIGQSCEKDKEIEEILVVLQQTLKNQISLKIVANQVAVTTVAESVASIFYDGDQTMDQVNPEVIGSYPTHGSMSTFSNIAFATGVNPFDAMRELDDQSTPVWYPSYQHQQGYNGLFLYDVNNRNGVGRNSGDDDIGNHFYHSNSNHNNGGGFFDFLYQNNPFNNGYGRGGFF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0731 318 SUPERFAMILY SRF-like 13 77 IPR036879 GO:0003677|GO:0046983
Amo12g0731 318 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Amo12g0731 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 122 - -
Amo12g0731 318 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Amo12g0731 318 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0731 Amo-Chr12 15085501 15087087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0731 7 146 Type I MADS-box Gene Family AT4G36590 33.333 2.11e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo12g0731 SRF-TF 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0731 - - ahf:112762769 513.072