Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0713 ATGGATTTTGATCCTTCTTCTTTGTTCCAACAACAAAACACTACTACTCACTGCTACTCTTCATCAAATCCCTCTTTTTCTTCTTCTTATTCTTCTTTATTAGATCCTTATAATTACCCTTTAGAAGACTTATTGTGTTTCTTAAATTATGAAGAAGATAACAACAATAATGTTAACAACAACAACAACAACAACCTTATTTTTCCCTTCAACGAAATCAAGGAATCTTCATCTTCCTATGATGATTCTTCCAACAATGAAGGATCTCAAGGAAGCAACAATGAATCAACATCATCATCATCACAAGAAGTCTCATCTCAAGGCCAATTATTACCACCGGTATCGCCATCGCCGCCGCCGCCACTGCCGCCATCAACAACAACAACGAAGACTACAACAACAAAATTACCATTATACCCTCCAAGGGAAAACAAGGAGAAAAGGCCCTATAGAGGAGTACGGAGAAGGCCATGGGGTAAATTTGCAGCTGAGATTAGAGACTCAACAAGGAATGGTGTTAGGGTTTGGATTGGAACATTTGACACAGCTGAAGCAGCAGCTTTGGCTTATGACCAAGCTGCGTTGACCACAAGAGGTTCCATGGCAGTTCTCAATTTCCCTGAAGAAGTTGTTAGGGAATCACTCAAGGACATTATGGTAAATACCAACAACAACAATAATAAGGAAGAAGGCTCTTCTCCTGTTTTAGCACTCAAGAGAAAACATACTATGAGAAAAAAGTCAAAGTCAAAGTCAAAGTCAAAGGTGATGATTAGTAATAGCAACAATAACACCAACAACAATAGCAATAAGAAGGCCAAAAGGGATGATGATGTTTTGGTGTTGGAGGATTTGGGTTCTGAGTATCTTGAACAGCTTCTGAGTTTGACTTCTTCTGAAAGCATTATTTGCTGGTAG 918 0.3878 MDFDPSSLFQQQNTTTHCYSSSNPSFSSSYSSLLDPYNYPLEDLLCFLNYEEDNNNNVNNNNNNNLIFPFNEIKESSSSYDDSSNNEGSQGSNNESTSSSSQEVSSQGQLLPPVSPSPPPPLPPSTTTTKTTTTKLPLYPPRENKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALTTRGSMAVLNFPEEVVRESLKDIMVNTNNNNNKEEGSSPVLALKRKHTMRKKSKSKSKSKVMISNSNNNTNNNSNKKAKRDDDVLVLEDLGSEYLEQLLSLTSSESIICW* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0713 305 CDD AP2 150 208 IPR001471 GO:0003700|GO:0006355
Amo12g0713 305 MobiDBLite consensus disorder prediction 112 126 - -
Amo12g0713 305 Gene3D AP2/ERF domain 149 209 IPR036955 GO:0003700|GO:0006355
Amo12g0713 305 Pfam AP2 domain 150 199 IPR001471 GO:0003700|GO:0006355
Amo12g0713 305 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 298 - -
Amo12g0713 305 SUPERFAMILY DNA-binding domain 150 208 IPR016177 GO:0003677
Amo12g0713 305 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Amo12g0713 305 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Amo12g0713 305 MobiDBLite consensus disorder prediction 76 153 - -
Amo12g0713 305 PANTHER DNA-BINDING DOMAIN 21 298 IPR044808 GO:0003700|GO:0009873
Amo12g0713 305 MobiDBLite consensus disorder prediction 241 275 - -
Amo12g0713 305 MobiDBLite consensus disorder prediction 254 269 - -
Amo12g0713 305 MobiDBLite consensus disorder prediction 76 111 - -
Amo12g0713 305 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Amo12g0713 305 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0713 Amo-Chr12 14720622 14721797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0713 127 305 AP2-EREBP Transcription Factor Family AT3G23240 49.721 6.28e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo12g0713 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0713 K14516 - gmx:100784784 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0713 12 14720622 14721797 Amo12g0713 12 14720622 14721797 ECH