Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0707 ATGGCTTCTAGTACCACCAGTAGCTCCGGCTCCGGCTCGCCGTGCGGGGCATGCAAGTTCCTAAGGCGAAAGTGCGCGTCGGACTGCGTATTCGCGCCATACTTCAGCTCGGAACAAGGGGCGGCAAGATTTGCAGCGATCCACAAAGTGTTTGGTGCAAGCAATGTTTCAAAGATGCTAATGCAGATTCCAAGTCATGAAAGGTGTGAGGCTGTGCTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTCTATGGTTGTGTCTCTCATATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAAGCACAACTAATGCAAGTGAAGGCACAGCTAGCTCATCAAAACATGCAGAATCATCATAATCAGTGGAACAATAATAATATTGGAGTAGGACAAACATTATTATTCAATAATTATAGTAATAATAATCAATTTTGTCCCACTAATAATGATATTAGTTACATGCCATCACCCCAAAGTTGTTCACTTGATGAGTCAATTGATCAAAGTAGCATTATTAGTGATGGAATAATGAGCATGCTGAGCACTGTGGAGGATTTCTCATTCCAAGCTTGTTCCAAGAAAAGATCATCATCTTATAATGACAGTGATTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATGAGGAATTATAACTAG 675 0.4207 MASSTTSSSGSGSPCGACKFLRRKCASDCVFAPYFSSEQGAARFAAIHKVFGASNVSKMLMQIPSHERCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAHQNMQNHHNQWNNNNIGVGQTLLFNNYSNNNQFCPTNNDISYMPSPQSCSLDESIDQSSIISDGIMSMLSTVEDFSFQACSKKRSSSYNDSDLGELQELALRMMRNYN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0707 224 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Amo12g0707 224 Coils Coil 94 114 - -
Amo12g0707 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 2 221 - -
Amo12g0707 224 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Amo12g0707 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0707 Amo-Chr12 14384158 14386870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0707 1 222 AS2 family AT2G42430 53.937 1.46e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo12g0707 LOB 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0707 K13944 - cpap:110815110 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0749 06 10583666 10584525 Amo12g0707 12 14384158 14386870 PCT
Amo12g0707 12 14384158 14386870 Amo06g0749 06 10583666 10584525 PCT