Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0674 ATGGTGGAAAAGGCGAAGGGTAGGAAGGAGGAGGTGGTTACCAGAGAGTACACTATCAATCTCCACAAGCGCTTGCATTCATGCACATTCAAGAAGAAGGCCCCGAAAGCCATTAAGGAGATAAGGAAGTTTGCTCAGAAAGCCATGGGGACCAATGATGTGAGAGTGGATGTGAAGTTGAACAAGTTTGTGTGGAGTCAAGGTATCCGAAGCGTCCCACGGAGGATCAGGGTACGCATTGCTCGCAAGAGGAACGACGACGAAGATGCAAAGGAAGAGCTCTACTCTCTCGTCACTGTTGTTGAAATCCCCAAGGAAGAGATCAAAGGTTTAGGCACAAAGGTTATTGAGGATGAGGATTGA 363 0.4793 MVEKAKGRKEEVVTREYTINLHKRLHSCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKFVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEEIKGLGTKVIEDED* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0674 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Amo12g0674 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Amo12g0674 120 PANTHER 60S RIBOSOMAL PROTEIN L31-2-RELATED 1 120 - -
Amo12g0674 120 Gene3D - 9 120 IPR023621 -
Amo12g0674 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Amo12g0674 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
Amo12g0674 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Amo12g0674 120 PANTHER 60S RIBOSOMAL PROTEIN L31 1 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0674 Amo-Chr12 12866846 12868374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0674 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 82.353 6.41e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0674 K02910 - gmx:100810835 219.55