Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0641 GTGATGGCAGAGGTGATTGGAACATTTATTTTGATGTTGTGTGTAAGTGGAATAATAGCAAGCACAAAATTCCAAAATGGTGAAGTGGGGCTTCTAGAGTATGCAGCCACAGCAGGATTAACAGTGGTTGTTATCATCTTCTCCATAGGACCAATTTCTTGTGCACATGTCAACCCAGCTGTCACAATTGCCTTTGCCACAATTGGTCATGTTCCATGGTACAAGGTTCCAATTTACATAATAGCACAGATAGTAGGTTCTATATTTGCCACATTTATAGGTAGCCTTGTTTATGGCATAAAATCAGAGGTTATGATCACAAGGCCAATCCAAGGTTGCAACTCTGCATTGTGGGTTGAACTCATTGCAACTTTCATCGTCATGTTCCTTGTTGCAGCTTTGACATCTGAGCATGAATCAGTTGGGCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGTCTTGCTGTACTAATCACAGGTTACTGA 489 0.409 VMAEVIGTFILMLCVSGIIASTKFQNGEVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGHVPWYKVPIYIIAQIVGSIFATFIGSLVYGIKSEVMITRPIQGCNSALWVELIATFIVMFLVAALTSEHESVGHLSGFVAGIAIGLAVLITGY* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0641 162 PANTHER AQUAPORIN NIP7-1-RELATED 1 161 - -
Amo12g0641 162 PRINTS Major intrinsic protein family signature 38 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo12g0641 162 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo12g0641 162 PRINTS Major intrinsic protein family signature 119 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo12g0641 162 PRINTS Major intrinsic protein family signature 146 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo12g0641 162 Pfam Major intrinsic protein 1 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo12g0641 162 SUPERFAMILY Aquaporin-like 2 161 IPR023271 -
Amo12g0641 162 PANTHER AQUAPORIN NIP2-1 1 161 IPR034294 -
Amo12g0641 162 ProSitePatterns MIP family signature. 56 64 IPR022357 -
Amo12g0641 162 Gene3D Glycerol uptake facilitator protein. 1 162 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0641 Amo-Chr12 11825005 11837138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0641 3 161 Major Intrinsic Protein MIP AT1G80760 39.623 8.40e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0641 K09874 - mtr:MTR_1g070385 283.108