Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0633 ATGGAGAATTGTAGCTATGAGAAAGTAGGTTTGAACCTTGAGGCAACAGAGTTGAGGTTGGGTTTGCCAGGCAGTGCTGATGAACATGATGAGAAACTCTCGTCATGTAGTTACTCATCATCATCATCATCAAGTGTTGTTATTAGAAGCAACAAGAGATCTTCACCTGAAGAATCCATTGATGATGAGGAAGAGCTCAAAAGCAACAAGAGAACCATGATTTCTCATCATAATGATGACCAAGACAAAAATGTCCCACCCTCAAAAGCACAAGTAGTAGTGGGGTGGCCACCAATTAGATCTTACAGGAAGAACAATGGTGTACAACAACAACAACAAGAACAAAAGAAGAAGGGAGAAGAGGTGTATGTGAAAGTGAGCATGGCAGGTGCACCTTACTTGAGGAAGATTGATCTCAATTTTTATAATACCTACCAACAATTACTCTTGGCTTTGGAAAATATGTTCAACTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAATTTGCTCCAACTTATGAAGACAAAGATGGTGATTGGATGTTGGTTGGAGATGTGCCATGGAACATGTTCATTTCTTCCTGCAAGAGGCTAAGGATTGTGAAAGGATCAGAAGCTAAGGGATTGGGTTGTTTATGA 654 0.4006 MENCSYEKVGLNLEATELRLGLPGSADEHDEKLSSCSYSSSSSSSVVIRSNKRSSPEESIDDEEELKSNKRTMISHHNDDQDKNVPPSKAQVVVGWPPIRSYRKNNGVQQQQQEQKKKGEEVYVKVSMAGAPYLRKIDLNFYNTYQQLLLALENMFNCTFGEYSEREGYNGSEFAPTYEDKDGDWMLVGDVPWNMFISSCKRLRIVKGSEAKGLGCL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0633 217 MobiDBLite consensus disorder prediction 24 66 - -
Amo12g0633 217 MobiDBLite consensus disorder prediction 35 53 - -
Amo12g0633 217 Pfam AUX/IAA family 15 215 IPR033389 -
Amo12g0633 217 ProSiteProfiles PB1 domain profile. 121 213 IPR000270 GO:0005515
Amo12g0633 217 PANTHER AUXIN-INDUCED PROTEIN 4 215 - -
Amo12g0633 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 215 IPR003311 GO:0005634|GO:0006355
Amo12g0633 217 Gene3D - 115 217 - -
Amo12g0633 217 SUPERFAMILY CAD & PB1 domains 119 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0633 Amo-Chr12 11703599 11705026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0633 105 214 B3 DNA Binding Superfamily AT2G46530 33.636 7.61e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo12g0633 AUX_IAA 4.4e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0633 K14484 - gmx:100792134 252.292