Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0630 ATGGCCAATCGCCATCCTTCCGAGGCTCCCGCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCGAACTTCGCCTCCGCCGACTCTACCCTCGCCGGAGGAACCGGCGCCTCCTCTCTCGCCGCCGCCGCAGCTGCAGCTGCTGCTTCTCCAGCGGCGCCGATGATGCTTCAGCTAAGCTCTGACGACGCCTCCGCCGCGTACCTCGTCGGAGCCACCGCAGGTGGTGGTTTCCACCCGCCTCCGGTGTACGAGCTTGGGCTGAGCCTGGAGCAAGGGAATGGAGGAGGGTTCTTGAAGCCTGAGGATGCTTCTGGAAGTGGAAAACGGTTTCGTGACGACGTTGTTGATGGAAGAGCTAAGAATGTTTTCCATGGGCAGCCCATGCCTACAACTGTTCCCGCTGCTCCACATCCACCAGGAATGCGCCCTCGGGTGCGGGCTCGTAGAGGTCAGGCTACAGATCCACACAGCATAGCTGAAAGGCTGCGCAGAGAAAGAATAGCTGAAAGGATCAGGGCCTTGCAAGAACTGGTTCCCAGTGTTAACAAGACAGATAGAGCTGCTATGCTCGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGGCTGGGCGGTGCCGGTGCAGTGGCTCCATTAGTAACCGACATCCCATTATCATCAGTCGAGGAAGAAGGCGGCGAGGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCGAATGATGGCACAGAAAGGCAAGTAGCTAAGCTAATGGAAGAAAATGTTGGCACCGCCATGCAGTTCCTTCAATCAAAAGCACTCTGCATCATGCCAATCTCACTAGCTTCAGCAATATACCAGTCACAACCACCAGACACCTCTAGCATAGTAAAGCCAGAAACTAACCCTCCTTCATAG 927 0.5534 MANRHPSEAPAADDFLEQILGLPNFASADSTLAGGTGASSLAAAAAAAAASPAAPMMLQLSSDDASAAYLVGATAGGGFHPPPVYELGLSLEQGNGGGFLKPEDASGSGKRFRDDVVDGRAKNVFHGQPMPTTVPAAPHPPGMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGRNQPAWEKWSNDGTERQVAKLMEENVGTAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0630 308 Gene3D - 148 210 IPR036638 GO:0046983
Amo12g0630 308 Pfam Helix-loop-helix DNA-binding domain 158 202 IPR011598 GO:0046983
Amo12g0630 308 MobiDBLite consensus disorder prediction 123 157 - -
Amo12g0630 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Amo12g0630 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 297 - -
Amo12g0630 308 SMART finulus 159 208 IPR011598 GO:0046983
Amo12g0630 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983
Amo12g0630 308 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0630 Amo-Chr12 11683545 11688226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0630 84 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.385 1.61e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g0630 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0630 - - gmx:100797789 447.588