Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0625 ATGGAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTTGGGCTGCCAGGGAACAACAAGAAGAAGAACAATGAAAAGAAGAGAGGGTTCTCTGAGACCGAATCTGAAACTGAGAGTGATGAGAACAATAATAGTGATGAAACTTCCAACACTACCGTGGATTTGTTGCTGAATCTCTCATCACCAAAGAAGGAAGCAAATAAGAATAACAACAATAATGGTGTTGTTGCTGAGAACCACTCATCTCCTAATAATAATAAGGAGAAGAATCTTCTTCCTTCTGATCCTGCCAAGCCTCCTGCTAAGGCTCAAGTGGTGGGATGGCCACCAGTGAGGTCATACAGGAAGAACATGTTTGCAGTTCAAAAAAGCAGCACAGAAGAGAGTCAGAAGAATGAGAAGAATAACAATAATGGAAATGGTAATGGAAGCTTTGTGAAGGTAAGCATGGATGGTGCACCCTACCTTCGCAAAGTGGACTTGAAGAACTACAACAGTTACCCTCAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCTTTCACTATTGGAAGTTGTGAATCAGAAGGAATGAAGGATTTCTTCATGAATGAGAGAGCTTTGATGGATTTATTGAACAATTCTGATTATGTCCCAACTTATGAAGATAAGGATGGAGATTGGATGCTTGTCGGTGATGTTCCTTGGGAGATGTTTGTGGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAAGAAGCAATTGGACTGGCACCTAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 789 0.417 MEKMVFEETELRLGLPGNNKKKNNEKKRGFSETESETESDENNNSDETSNTTVDLLLNLSSPKKEANKNNNNNGVVAENHSSPNNNKEKNLLPSDPAKPPAKAQVVGWPPVRSYRKNMFAVQKSSTEESQKNEKNNNNGNGNGSFVKVSMDGAPYLRKVDLKNYNSYPQLSDALGKMFSSFTIGSCESEGMKDFFMNERALMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0625 262 Gene3D - 137 256 - -
Amo12g0625 262 SUPERFAMILY CAD & PB1 domains 135 243 - -
Amo12g0625 262 MobiDBLite consensus disorder prediction 44 91 - -
Amo12g0625 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 255 IPR003311 GO:0005634|GO:0006355
Amo12g0625 262 MobiDBLite consensus disorder prediction 118 144 - -
Amo12g0625 262 PANTHER AUXIN-INDUCED PROTEIN AUX28 3 255 - -
Amo12g0625 262 MobiDBLite consensus disorder prediction 1 144 - -
Amo12g0625 262 MobiDBLite consensus disorder prediction 19 35 - -
Amo12g0625 262 Pfam AUX/IAA family 8 253 IPR033389 -
Amo12g0625 262 ProSiteProfiles PB1 domain profile. 143 244 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0625 Amo-Chr12 11597176 11603709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0625 114 242 B3 DNA Binding Superfamily AT5G37020 28.682 2.23e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo12g0625 AUX_IAA 1.9e-89 CL0072