Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0624 ATGGAGAATTGTAGCTATGAGAAAGTAGGTTTGAACCTTGAGGCAACAGAGTTGAGGTTGGGTTTGCCAGGCAGTGCTGATGAACATGATGAGAAACTCTCGTCATGTAGTTACTCATCATCATCATCATCAAGTGTTGTTATTAGAAGCAACAAGAGATCTTCACCTGAAGAATCCATTGATGATGAGGAAGAGCTCAAAAGCAACAAGAGAACCATGATTTCTCATCATAATGATGACCAAGACAAAAATGTCCCACCCTCAAAAGCACAGCAAGTAGTAGTGGGGTGGCCACCAATTAGATCTTACAGGAAGAACAATGGTGTACAACAACAACAAGAACAAAAGAAGAAGGGAGAAGAGGTTGATGGGGTTGGTATGTATGTGAAAGTGAGCATGGCAGGTGCACCTTACTTGAGGAAGATTGATCTCAATTTTTACAACACCTACCAAGAATTACTCATGGCTTTGGAAAATATGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAATTTGCTCCAACTTATGAAGACAAAGATGGTGATTGGATGTTGGTTGGAGATGTGCCATGGAACATGTTCATTTCTTCCTGCAAGAGGCTAAGGATTGTGAAAGGATCAGAAGCTAAGGGATTGGGTTGTTTATGA 669 0.4066 MENCSYEKVGLNLEATELRLGLPGSADEHDEKLSSCSYSSSSSSSVVIRSNKRSSPEESIDDEEELKSNKRTMISHHNDDQDKNVPPSKAQQVVVGWPPIRSYRKNNGVQQQQEQKKKGEEVDGVGMYVKVSMAGAPYLRKIDLNFYNTYQELLMALENMFKCTFGEYSEREGYNGSEFAPTYEDKDGDWMLVGDVPWNMFISSCKRLRIVKGSEAKGLGCL* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0624 222 MobiDBLite consensus disorder prediction 35 53 - -
Amo12g0624 222 PANTHER AUXIN-INDUCED PROTEIN 4 220 - -
Amo12g0624 222 MobiDBLite consensus disorder prediction 54 70 - -
Amo12g0624 222 ProSiteProfiles PB1 domain profile. 126 218 IPR000270 GO:0005515
Amo12g0624 222 Gene3D - 120 222 - -
Amo12g0624 222 Pfam AUX/IAA family 15 220 IPR033389 -
Amo12g0624 222 SUPERFAMILY CAD & PB1 domains 124 210 - -
Amo12g0624 222 MobiDBLite consensus disorder prediction 24 70 - -
Amo12g0624 222 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 220 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0624 Amo-Chr12 11540428 11541902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0624 129 219 B3 DNA Binding Superfamily AT2G46530 38.462 8.73e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo12g0624 AUX_IAA 2.6e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0624 K14484 - gmx:100792134 261.536