Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0597 AACCCCCTTTATAAAAACTTAATCTTTAGCTGTTTTCTCGTAATTCAAGCGCTAAAATATTCAACTTTTTTACATCTATTCCATGGAATCAGATCCTCGCATTTTTCAAGAAGGGAGCTTCTCTCAAAAGACCAATCATTTATTTCTCTCACTGAAAATCCCATCGACGACTGCTGGCGATGCGACCTAAACTGGTTAATAAATCGGCAGAAGCTCACCGATTGTGGCATCGGCTTTGGATGCAACGCAATGGGCAGAAAGGCAGCCAGATCTACTAATGAAATAGGGGTGAGCGGGTCGAGTCCGTATCGCTACGGAACAACAGTTGCGTTCACCCTTGGAATGTGGAACACCTTTGAGGGAAAATCCTTTCCTGAAGTTGAACAAGATTTCAACAACTACAAGACAGTGGACGGCTGTAGCACCAATGTCCACGTCACCGATCACGGCTACATCACGCCCCAATACGCCTTGAATGTGATCATCCACAATATCCACGTCCACTATTGCAAGCCCTCCGGCAACACCAACATAAGAGCCTCTTCGACCCACATGGGGTGGTAG 564 0.4592 NPLYKNLIFSCFLVIQALKYSTFLHLFHGIRSSHFSRRELLSKDQSFISLTENPIDDCWRCDLNWLINRQKLTDCGIGFGCNAMGRKAARSTNEIGVSGSSPYRYGTTVAFTLGMWNTFEGKSFPEVEQDFNNYKTVDGCSTNVHVTDHGYITPQYALNVIIHNIHVHYCKPSGNTNIRASSTHMGW* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0597 187 PANTHER PECTATE LYASE 18-RELATED 27 187 IPR045032 GO:0030570
Amo12g0597 187 SUPERFAMILY Pectin lyase-like 49 176 IPR011050 -
Amo12g0597 187 Gene3D - 52 187 IPR012334 -
Amo12g0597 187 PANTHER PECTATE LYASE 12-RELATED 27 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0597 Amo-Chr12 11076798 11077426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0597 33 187 Polysaccharide Lyase AT1G04680 42.593 8.48e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0597 K01728 - gmx:100789303 152.91