Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0563 ATGAGAGAGGGTTTAAGATCTCAGACTCGATTGGGGAATGTTTGTGCTGGCGGTGGTGATGGTGTAAAGAGTGTTCCTTTCGATTTAGGTGGTGAAGGTTCGCAGGTTGGTGGGGAGGTGTTAGGGTCAGTGGTTGCGGAGAAGGAGGATAATGTCGTTGAAAGAGATGCGAAGGAAGAATGTGATGCTGATTTGGGTGCTAGTACTAGTGGGAAAGGGGATGCTGAATCAGTTGAGGGTGGGGGCAATGAGGGCTGTGAAGATGGTGGTGTTGAAAGGATGGTAGAGAGTGAGAGAGAAGAGTTGACAGAGTCTGTAACTATAGGTGGTCGAGTGTTGCGTTCCAGGACGAAGAGGCCAGAAAATGGAAAACCTTGCAGTGGAGGGAGTAGTGGCGGTGTAGTTGTTTCAGGGAGAGGCGGGGGACATGGTGGTCTTAGGAGGGTAACAGTCAAGAAGGATAGTGAAGATGATGATGATTTTGTTCCTAATGGTTGTGCGAATAAGGGGGTTGGGCTGGAGAAGAAACGGAAGCGTGGGAGGCCTCGGAAAGTAAAGTTGGAAGAATCAGACGAGTTAGGTATGGTGAGTTGTGGGAATGAGAAGGTTGAGCTGAAGAAGGATGTGAATGGCAGAAAGAAGAAGCGGAAGCGCGGGAGGCCTCCTAAAGTGAAGGTGGAAGATCCGGATAAGCTAGTTGAGCAGTCTCCAAGGAAGAGGGGTAGACCCCCCAAGGTTCATGGACAAAACCATCTCCCAATAATGGTGCATGATAGAAAAGTCAATGTGCGCCGTCGAAAAGGTAAAAAAGGTTTAACTGCAACGGTTGGTGCCAAAGCAAATGGGATTGCTTATTGGAGCTCAAGGAGATCTTCTCAGAAAGAGCTAGAAACGAAGGGAATTTCTCCTGTGAAGGATGATAAATTAGGGAAGGTTTTGGAAACTGAGAGCAATGGGGTTTGTGAGGGAATAAGTGGAGAAGTAATGGAAGGAAGAAAGCAAGAACTAGGAAAGGATGGAAGAAAGAAAAAAAAGCGGAAGGAAGGAAGGAAGGAAGAAAAGCAGTTAGTCAGGGAAAAGATTATGGAGCAGATTTTAGCTGCTGGCTGGACAGTTGATTATAGACCTAGGAATGGAAGGGAATACAAGGATGCCGTGTATGTTAGTCTAGATGGTAAGACACACTGGTCTATCACCTTGGCCTACAGTAGGCTTAAACAACATTATGAAGCTGGTGATGGTGAAGGAACGGTATATGGGCCAGGTTTCAAATTTACACCAATACCTGAAGCGGATTTCCAAATGCTGACCAAGGTAATGAAAAAGCAAAGAGGAAGTAAAAATAAAAAGATGCAAAATGGGGTGAAGGGTAAAAAGTGGAAGAAAGGAAAAGCAGGTTCGCATGCAGGCATGGGTAAATCTGCGAAGCGGAAAATGAAAAGGAAATGGACAGAGGACGATGACACAGATGTTATGTTGCCTAATAAAGTGTCAGGTCTGGTCAGGGATCATAAGAGACATAAAACACAAAGCAAGAAGCGAGGTGCTCCATTGGTTCGCAATGCTGAGGTTGATATAGATTCAGAAGTTAATGGATATGTACCATACTGCGGAAAACGAACTGTACTTGCATGGATGATAGATTTGGGAACAATTCTGCAAGATGGGAAGGTTCATTATATGCAACTTGGAGAGAACAATGTGTTATTGGACGGTAAGATCACAGGAGATGGCATTCATTGCGGTTGCTGTAATGAAGTCATAACGATTTCAGATTTTGAAGCTCATGCAGGAATCAAACACTCTGATCCACTTAAAAATATACACATAGAGGGAGGAACTTCCCTCTTGCAATGCCTACTAGATTCATGGAATAAACAGGATGAGTGTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCTGGTGAGGATCCAAATGATGACACATGTGGTGTCTGTGGAGATGGGGGAGACTTGATCTGCTGTGATGGTTGCCCATCAACCTTCCACCAGAGTTGCTTGGATATAAACAAGTTCCCATCCGGTGACTGGCACTGTGTATATTGTTGTTGCAAATTTTGCGGGTCGGTTGGTGGTAGTTCAAATCAGACAGATGAAAAAGATGGTTCTGCTATGTCAACCTTACTCACATGCCGTTTATGTGAAGCAAAATACCACAGAGACTGTGCAGAAGAAAATGGTGCCAAGCCTGATGATTCCAGAGATGCCTCCTTTTGTGGAAACAGATGCCAAGAGTTATCAGAGAGGCTTGAAATGCTTCTTGGGGTTAAGCGTGAAATTGAAGATGGATTTTCTTTGACTTTAATTCGGAGATCAGATGTTGCCCTTGATGTTTCTCAGACAAAACCTGAGATAATTGAATGTAATTCCAAGCTGGCTGTTGCATTATCGGTAATGGATGAGTGCTTCATGCCATACATTGATGAGAGAAGCGGGATTAATCTGATCCATGGCATTCTATATAATTGTGGGTCAAACTTCAAACGTCTGAACTATAGTGGATTCATTACTGCAATTCTCGAGCGAGGGGATGAAATCGTTGCTACTGCAACTATCAGGATTCATGGAAATCAACTAGCAGAGATGCCATTTATTGGGACCCGTTTTATGTATAGGCGACAAGGGATGTGCCGCCGGCTTCTAAATGGCATTGAATGTGCACTTAGCTCTTTAAATGTTGAATTATTGGTCATACCAGCTATCTCAGAAATGAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCGCTTGAATTGGAAAACAAGAAAATAATAAAGAGCATGAGTCTGTTGATATTCCCTCATGTAGATATGCTGCAGAAGAAGATGTTGAAGCATAAGTTTGCTGAGGAAACTGTGATTACTGCAGAAGCTTCCAATCTTCTGAAAGATCATACAGAAGGCGAGGTGGCAAATAATTGTGAAGGGGCAGAATCATTTGGATCTCAGTCAATGAACAATTCTGCCGACATCCCTTGTTCTAATGATGACCAGATGATGGATAAAACCATGCCTACTGAATCTGGCAGTCTTCTTCCTGAGGGTTCATTGAATAACTTACCCAACAATAATGGCAACACTAAACTTCATGATAAATGTCCAGAAGATATCACATGCCAAGTTGTTTTCCATGAAAATTTGCCAGTGGAAGAAATAAACACTGCAAATCCCCCTGATGATGGAACTGAAGACGCCGGTACACGTAAGAATACCAGTCTTGATTGTGTCGAGCTGAACGATGATGAGAAGCAAGTAGATTTAGATGGTCAATCAAACAACTGCTGCAATACTTATGAGGAAACAGAATGTCTTAGAGATGGTTGTCACTCTGGTGAAGCAGTTCCTACAACCAATGACTCGGTGCACCTTCAGTCAAAGGACATCACTGAAGATTGTCCCGATAATTGCGAAACAAACTCCAAAGTGGTAACCACACCAGGCTCTGATGAAGCCGAAGTACACCCAACTGAACCACCTAAGCACCAGACAGATACAGAAGATTGCCAATCCTTTCCTGTATCTTCTGATTTATGTGAGAAGTTTGTGGATTGTGCTGATGATAATAGTAAGCCATCCACAGATGTTAAGGCCGATTCCTTCCCGCTGATACAGACAGAAATCCAAACGACGAACATCTGA 3660 0.4342 MREGLRSQTRLGNVCAGGGDGVKSVPFDLGGEGSQVGGEVLGSVVAEKEDNVVERDAKEECDADLGASTSGKGDAESVEGGGNEGCEDGGVERMVESEREELTESVTIGGRVLRSRTKRPENGKPCSGGSSGGVVVSGRGGGHGGLRRVTVKKDSEDDDDFVPNGCANKGVGLEKKRKRGRPRKVKLEESDELGMVSCGNEKVELKKDVNGRKKKRKRGRPPKVKVEDPDKLVEQSPRKRGRPPKVHGQNHLPIMVHDRKVNVRRRKGKKGLTATVGAKANGIAYWSSRRSSQKELETKGISPVKDDKLGKVLETESNGVCEGISGEVMEGRKQELGKDGRKKKKRKEGRKEEKQLVREKIMEQILAAGWTVDYRPRNGREYKDAVYVSLDGKTHWSITLAYSRLKQHYEAGDGEGTVYGPGFKFTPIPEADFQMLTKVMKKQRGSKNKKMQNGVKGKKWKKGKAGSHAGMGKSAKRKMKRKWTEDDDTDVMLPNKVSGLVRDHKRHKTQSKKRGAPLVRNAEVDIDSEVNGYVPYCGKRTVLAWMIDLGTILQDGKVHYMQLGENNVLLDGKITGDGIHCGCCNEVITISDFEAHAGIKHSDPLKNIHIEGGTSLLQCLLDSWNKQDECERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCVYCCCKFCGSVGGSSNQTDEKDGSAMSTLLTCRLCEAKYHRDCAEENGAKPDDSRDASFCGNRCQELSERLEMLLGVKREIEDGFSLTLIRRSDVALDVSQTKPEIIECNSKLAVALSVMDECFMPYIDERSGINLIHGILYNCGSNFKRLNYSGFITAILERGDEIVATATIRIHGNQLAEMPFIGTRFMYRRQGMCRRLLNGIECALSSLNVELLVIPAISEMRETWTSVFGFEPLELENKKIIKSMSLLIFPHVDMLQKKMLKHKFAEETVITAEASNLLKDHTEGEVANNCEGAESFGSQSMNNSADIPCSNDDQMMDKTMPTESGSLLPEGSLNNLPNNNGNTKLHDKCPEDITCQVVFHENLPVEEINTANPPDDGTEDAGTRKNTSLDCVELNDDEKQVDLDGQSNNCCNTYEETECLRDGCHSGEAVPTTNDSVHLQSKDITEDCPDNCETNSKVVTTPGSDEAEVHPTEPPKHQTDTEDCQSFPVSSDLCEKFVDCADDNSKPSTDVKADSFPLIQTEIQTTNI* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0563 1219 MobiDBLite consensus disorder prediction 51 192 - -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 1151 1175 - -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 1058 1077 - -
Amo12g0563 1219 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 163 1135 - -
Amo12g0563 1219 PANTHER PHD FINGER PROTEIN 12 163 1135 IPR042163 GO:0003714|GO:0045892
Amo12g0563 1219 ProSiteProfiles Zinc finger PHD-type profile. 647 692 IPR019787 -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 222 241 - -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 442 485 - -
Amo12g0563 1219 Pfam Tify domain binding domain 572 621 IPR032308 -
Amo12g0563 1219 Pfam AT hook motif 237 247 IPR017956 GO:0003677
Amo12g0563 1219 Pfam AT hook motif 215 226 IPR017956 GO:0003677
Amo12g0563 1219 Pfam AT hook motif 176 186 IPR017956 GO:0003677
Amo12g0563 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 708 IPR013083 -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 442 478 - -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 147 163 - -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 331 355 - -
Amo12g0563 1219 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 790 950 IPR000182 GO:0016407
Amo12g0563 1219 SUPERFAMILY FYVE/PHD zinc finger 642 694 IPR011011 -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 204 270 - -
Amo12g0563 1219 SMART PHD_3 649 690 IPR001965 -
Amo12g0563 1219 SMART PHD_3 691 751 IPR001965 -
Amo12g0563 1219 MobiDBLite consensus disorder prediction 51 65 - -
Amo12g0563 1219 PRINTS AT-hook-like domain signature 235 245 IPR017956 GO:0003677
Amo12g0563 1219 PRINTS AT-hook-like domain signature 176 186 IPR017956 GO:0003677
Amo12g0563 1219 PRINTS AT-hook-like domain signature 213 224 IPR017956 GO:0003677
Amo12g0563 1219 SMART AT_hook_2 176 188 IPR017956 GO:0003677
Amo12g0563 1219 SMART AT_hook_2 237 249 IPR017956 GO:0003677
Amo12g0563 1219 SMART AT_hook_2 215 227 IPR017956 GO:0003677
Amo12g0563 1219 MobiDBLite consensus disorder prediction 89 105 - -
Amo12g0563 1219 CDD PHD1_AIRE 650 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0563 Amo-Chr12 10071613 10079212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0563 173 969 PHD Transcription Factor Family AT5G36670 40.936 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0563 - - lang:109346644 1153.66