Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0519 ATGGCACTTTTTACTACTACACTTCTAGTTGCTCTCATTGGTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTAGTTGGCAGGGTGGACATGCCACTTTCTATGGTGGTGGTGATGCTTCCGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACCAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAACCTGCCACCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAAACAACATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGGCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCAGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGGCTGGCAAACAATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAATGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTGTGTACTCGCTATGATTAGTCCAAAACAAAGATGA 768 0.4544 MALFTTTLLVALIGLLIGINLQGAIADYGGSWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPATIIVTATNFCPPNFALAKQHGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTSQASTWHQLTGSCVLAMISPKQR* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0519 255 Gene3D - 162 240 IPR036749 -
Amo12g0519 255 PANTHER EXPANSIN 10 233 - -
Amo12g0519 255 Gene3D - 20 158 IPR036908 -
Amo12g0519 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Amo12g0519 255 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Amo12g0519 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Amo12g0519 255 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Amo12g0519 255 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Amo12g0519 255 PANTHER EXPANSIN-A15 10 233 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Amo12g0519 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Amo12g0519 255 Pfam Expansin C-terminal domain 163 235 IPR007117 -
Amo12g0519 255 SMART dpbb_1 67 152 IPR007112 -
Amo12g0519 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Amo12g0519 255 Pfam Lytic transglycolase 67 151 IPR009009 -
Amo12g0519 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 232 IPR007117 -
Amo12g0519 255 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Amo12g0519 255 SUPERFAMILY PHL pollen allergen 159 235 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0519 Amo-Chr12 8888214 8890760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0519 8 232 Expansin Gene Family AT2G40610 80.531 5.34e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0519 - K20628 gmx:100816848 422.55