Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0509 ATGGATGAAATGCGTGAAGAGTTCTCTCCGATTGGATTGACCTCTCCCAAAATCCACGCCATTCCTTGGAGGAAAATTAGGATTTTTATTTTAGGAATTTGGGTTTTGATGAGGGAATGGATTCTGCAGCTTATTCTGATTGGGTTGTTGTTTGAGTTTTGGAAGAGTATTATGGCTATTATAACAACAACAAGGAGGACTGAAAGGTTCAGTGGTACAACACCACCAACATGTAAGTACTGGCTAGCTGGGAGATGCAACAGGAATCCTTGCAAATTTTTGCATAGCTTATCGACATTGCCATCCAATGTACATAATGCCAATATGACATATATGCATTCGAAGAATCCACATTTGTCTGCTGAGAAGATGRCCAGTTCCTCTGTTAAGAAGCCAACAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGCAAATTGTGCACGAAAGGCTGTTGAGTGTGGATCAGAARCTATGTCTGTTGAGAAGCCAACCCAGTGTGAACAAATGGATATATCCATTGAAAAGACTGAAAGTGTGGAAGAAGTGGCCACTGTTGCTAAGTCTCCTATGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTGCATGGTGACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCATTACCTGCTGGTTCAGATAAACTTTATTCTGGTAGCACTGATGGCACAGTTCGGGCATGGGATTGCAACACTGGCCATTGTGTTAACATGATCCATCTTAATTCTGAAGTTACCTCGCTCATATCTGAGGGCCCATGGATTTTTGCCGGCGTGAAGAATGCTGTAAAGGYATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTTCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATACAGCTCTGATCCCAAACCTGAGTCTCCTTTCGAACTGGTTGCAACACTAAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCAATGGACCATAGCATCAAGGTGTGGGACCTAAATACATTACAGTGCACAATGACACTTAACGGGCATACCGACGTAGTCACGTCACTTCTTTGTTGGGAAGATTATTTATTATCGAGTTCATATGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTGAAAGTGGCATATACTCACACTGACAAAAATGCTATTCTTGGACTATATGGAATGACAGATGCAGACGCCAAGCCAATATTGTTCTGCTCGTGCCAAGACAATTCAGTTCGCATGTATGAGTTGCCGACGTTTTTAGAGAGAGGTCGACTATTTACAAGACGAGAAGTTCGATCCTTCGCGATAGGTCCTGGTGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAGATGGTTGGAAGAGCCAAAGGTGCCAACCTCTTGA 1572 0.4307 MDEMREEFSPIGLTSPKIHAIPWRKIRIFILGIWVLMREWILQLILIGLLFEFWKSIMAIITTTRRTERFSGTTPPTCKYWLAGRCNRNPCKFLHSLSTLPSNVHNANMTYMHSKNPHLSAEKMXSSSVKKPTNCAPKAFKKPANCARKAVECGSEXMSVEKPTQCEQMDISIEKTESVEEVATVAKSPMEKSRSICKYWMTDNCVHGDLCQNLHSWFYGDGFTTLAKLHEHKKVVTGIALPAGSDKLYSGSTDGTVRAWDCNTGHCVNMIHLNSEVTSLISEGPWIFAGVKNAVKXWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRYSSDPKPESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLNTLQCTMTLNGHTDVVTSLLCWEDYLLSSSYDCTVNVWVCTEEGTLKVAYTHTDKNAILGLYGMTDADAKPILFCSCQDNSVRMYELPTFLERGRLFTRREVRSFAIGPGGLFFTGDGTGLLNVWRWLEEPKVPTS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0509 523 ProSiteProfiles Zinc finger C3H1-type profile. 72 98 IPR000571 GO:0046872
Amo12g0509 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 389 - -
Amo12g0509 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 395 IPR001680 GO:0005515
Amo12g0509 523 Pfam WD domain, G-beta repeat 350 386 IPR001680 GO:0005515
Amo12g0509 523 Pfam WD domain, G-beta repeat 391 425 IPR001680 GO:0005515
Amo12g0509 523 Pfam WD domain, G-beta repeat 226 261 IPR001680 GO:0005515
Amo12g0509 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 261 - -
Amo12g0509 523 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Amo12g0509 523 SUPERFAMILY CCCH zinc finger 191 216 IPR036855 GO:0046872
Amo12g0509 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 425 IPR001680 GO:0005515
Amo12g0509 523 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Amo12g0509 523 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Amo12g0509 523 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Amo12g0509 523 PANTHER - 71 521 IPR044715 -
Amo12g0509 523 Gene3D - 206 347 IPR015943 GO:0005515
Amo12g0509 523 Gene3D - 348 522 IPR015943 GO:0005515
Amo12g0509 523 SMART WD40_4 301 338 IPR001680 GO:0005515
Amo12g0509 523 SMART WD40_4 348 386 IPR001680 GO:0005515
Amo12g0509 523 SMART WD40_4 476 513 IPR001680 GO:0005515
Amo12g0509 523 SMART WD40_4 389 426 IPR001680 GO:0005515
Amo12g0509 523 SMART WD40_4 432 473 IPR001680 GO:0005515
Amo12g0509 523 SMART WD40_4 222 261 IPR001680 GO:0005515
Amo12g0509 523 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 71 521 - -
Amo12g0509 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Amo12g0509 523 ProSitePatterns Trp-Asp (WD) repeats signature. 373 387 IPR019775 -
Amo12g0509 523 SMART c3hfinal6 192 217 IPR000571 GO:0046872
Amo12g0509 523 SMART c3hfinal6 73 97 IPR000571 GO:0046872
Amo12g0509 523 SUPERFAMILY WD40 repeat-like 213 513 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0509 Amo-Chr12 8728612 8731263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0509 287 477 Miscellaneous Gene Families AT5G08390 25.381 4.37e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo12g0509 WD40 1.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0509 - - ahf:112726849 971.844