Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0508 ATGGATTATATGCGTGAAGAGTTCTCTCCGATTGGATTGACCTCGCCCAAACTCCACGCCATTCCTTGGAGGAAAGTTAGGATTTTTATTTTAGGAATTTGGGTTTTGATGAGGGAATGGATTCTGCAGCTTATTCTGATTGGGTTGTTGTTTGAGTTTTGGAAGAGTATTATGGCTATTATAACAACAACAAGGAGGACTGAAAGGTTCAGTGGTACAACACCACCAACATGTAAGTACTGGCTAGCTGGGAGATGCAACAGGAATCCTTGCAAATTTTTGCATAGCTTATCGACATTGCCATCCAATGTACATAATGCCAATATGACATATATGCATTCGAAGAATCCACATTTGTCTGCTGAGAAGATGACCAGTTCCTCTGTTAAGAAGCCAACAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGCAAATTGTGCACGAAAGGCTGTTGAGTGTGGATCAGAARCTATGTCTGTTGAGAAGCCAACCCAGTGTGAACAAATGGATATATCCATTGAAAAGACTGAAAGTGTGGAAGAAGTGGCCACTGTTGCTAAGTCTCCTATGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTGCATGGTGACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCATTACCTGCTGGTTCAGATAAACTTTATTCTGGTAGCACTGATGGCACAGTTCGGGCATGGGATTGCAACACTGGCCATTGTGTTAACATGATCCATCTTAATTCTGAAGTTACCTCGCTCATATCTGAGGGCCCATGGATTTTTGCCGGCGTGAAGAATGCTGTAAAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTTCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATACAGCTCTGATCCCAAACCTGAGTCTCCTTTCGAACTGGTTGCAACACTAAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCAATGGACCATAGCATCAAGGTGTGGGACCTAAATACATTACAGTGCACAATGACACTTAACGGGCATACCGACGTAGTCACGTCACTTCTTTGTTGGGAAGATTACTTATTATCGAGTTCATATGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTGAAAGTGGCATATACTCACACTGACAAAAATGCTATTCTTGGACTATATGGAATGACAGATGCAGACGCCAAGCCAATATTGTTCTGCTCGTGCCAAGACAATTCAGTTCGCATGTATGAGTTGCCGACGTTTTTAGAGAGAGGTCGACTATTTACAAGACGAGAAGTTCGATCCTTCGCGATAGGTCCTGGTGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAGATGGTTGGAAGAGCCAAAGGTGCCAACCTCTTGA 1557 0.4335 MDYMREEFSPIGLTSPKLHAIPWRKVRIFILGIWVLMREWILQLILIGLLFEFWKSIMAIITTTRRTERFSGTTPPTCKYWLAGRCNRNPCKFLHSLSTLPSNVHNANMTYMHSKNPHLSAEKMTSSSVKKPTNCAPKAFKKPANCARKAVECGSEXMSVEKPTQCEQMDISIEKTESVEEVATVAKSPMEKSRSICKYWMTDNCVHGDLCQNLHSWFYGDGFTTLAKLHEHKKVVTGIALPAGSDKLYSGSTDGTVRAWDCNTGHCVNMIHLNSEVTSLISEGPWIFAGVKNAVKTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRYSSDPKPESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLNTLQCTMTLNGHTDVVTSLLCWEDYLLSSSYDCTVNVWVCTEEGTLKVAYTHTDKNAILGLYGMTDADAKPILFCSCQDNSVRMYELPTFLERGRLFTRREVRSFAIGPGGLFFTGDGTGLLNVWRWLEEPKVPTS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0508 518 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Amo12g0508 518 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Amo12g0508 518 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Amo12g0508 518 ProSiteProfiles Zinc finger C3H1-type profile. 72 98 IPR000571 GO:0046872
Amo12g0508 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 420 IPR001680 GO:0005515
Amo12g0508 518 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 71 516 - -
Amo12g0508 518 SMART WD40_4 427 468 IPR001680 GO:0005515
Amo12g0508 518 SMART WD40_4 296 333 IPR001680 GO:0005515
Amo12g0508 518 SMART WD40_4 343 381 IPR001680 GO:0005515
Amo12g0508 518 SMART WD40_4 222 261 IPR001680 GO:0005515
Amo12g0508 518 SMART WD40_4 384 421 IPR001680 GO:0005515
Amo12g0508 518 SMART WD40_4 471 508 IPR001680 GO:0005515
Amo12g0508 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 261 - -
Amo12g0508 518 PANTHER - 71 516 IPR044715 -
Amo12g0508 518 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Amo12g0508 518 Pfam WD domain, G-beta repeat 345 381 IPR001680 GO:0005515
Amo12g0508 518 Pfam WD domain, G-beta repeat 386 420 IPR001680 GO:0005515
Amo12g0508 518 Pfam WD domain, G-beta repeat 226 261 IPR001680 GO:0005515
Amo12g0508 518 SUPERFAMILY WD40 repeat-like 217 511 IPR036322 GO:0005515
Amo12g0508 518 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Amo12g0508 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 384 - -
Amo12g0508 518 Gene3D - 213 296 IPR015943 GO:0005515
Amo12g0508 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 390 IPR001680 GO:0005515
Amo12g0508 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Amo12g0508 518 Gene3D - 297 515 IPR015943 GO:0005515
Amo12g0508 518 SMART c3hfinal6 192 217 IPR000571 GO:0046872
Amo12g0508 518 SMART c3hfinal6 73 97 IPR000571 GO:0046872
Amo12g0508 518 SUPERFAMILY CCCH zinc finger 191 216 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0508 Amo-Chr12 8701416 8704057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0508 311 472 Miscellaneous Gene Families AT5G08390 26.061 5.62e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo12g0508 WD40 1.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0508 - - ahf:112726849 957.592