Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0504 ATGGGCCAAATTCAATTTCCACCCGTTAACCACTCTCCCCCTTCATCGGTGAACATTGTACCTGACACATGCCACCTCACCGTACCTCTCCTATGTGTGGCACTCCCTCAAGCTGGACAGCAATGCAGAAAGGATAAGTATTACCGAACTGTTGGAGACAAAATCCTTCCATTCAGCAAAATTATTGTCGATTCTTTCGAACATGGCAACTTCTCTACAATTCAATCTGCCATTGATTTTGTTCCTTCCAACAATAAGTATTGGGTTTCAATCAATGTCAAGGCTGGTATTTACAGGGAGAAAGTGACGATTCCAAGTGATAAACCATACATAATATTGAAGGGAACTGGAAAGAAGAAAACGTGGGTTGAATGGGGTGACCATAATACAACCGCTCAGAGCCCTACGTTCCAATCCATGGCTGATAATATCGTCGTCAAATCCATCTCTTTTAGGGTAACTAACCATTTATAA 474 0.4198 MGQIQFPPVNHSPPSSVNIVPDTCHLTVPLLCVALPQAGQQCRKDKYYRTVGDKILPFSKIIVDSFEHGNFSTIQSAIDFVPSNNKYWVSINVKAGIYREKVTIPSDKPYIILKGTGKKKTWVEWGDHNTTAQSPTFQSMADNIVVKSISFRVTNHL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0504 157 PANTHER PECTINESTERASE 10-RELATED 41 154 - -
Amo12g0504 157 Gene3D - 58 156 IPR012334 -
Amo12g0504 157 Pfam Pectinesterase 61 153 IPR000070 GO:0030599|GO:0042545
Amo12g0504 157 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 154 - -
Amo12g0504 157 SUPERFAMILY Pectin lyase-like 61 152 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0504 Amo-Chr12 8169190 8172021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0504 61 152 Carbohydrate Esterase AT2G19150 45.652 2.01e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0504 - - adu:107471653 207.994