Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0498 ATGGCTATTATAACAACAACAAAGAGAACTGAACGGTTCCGTCGAACAACACCACCAACATGCAAGTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGCATTCGAAAAAGCCCGATTCGTCCGTTGAGAAGATGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCAGAAGCTATATCTTCCGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTGTTGCTAAGGCTTGTGTGGATAAATCACGTAGTATTTGCAAATATTGGATGACTGACAATTGTGTGGACGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGGAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTAACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGACTCCTTTCAAACTGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAGGATGCTTTATTCTGGATCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGGCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACCAAATTGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTAGACTATTTACGAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTGGCGGACTCTTCTTTACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGTAG 1428 0.4426 MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKKPDSSVEKMASSSAKKAINCAPKAFKKPENCALKAVECRPEAEAISVEKPSKCEQKAEAISSVEKPSKCEQKAVLIEKTADVEDVATVAKACVDKSRSICKYWMTDNCVDGDLCQNLHSWFYGDGFSTLAKLHEHKEAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVNMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFETPFKLVATLSGHSKPVVCLAIGCHRMLYSGSMDHSIKVWDLDTFQCTMTLNGHTDVVTSLICWDNYLLSGSSDCTVNVWVCTEEGTLEVTYTHTHQIAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPGGLFFTGDGTGLLNVWKWLEE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0498 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 475 - -
Amo12g0498 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Amo12g0498 475 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Amo12g0498 475 SMART c3hfinal6 154 179 IPR000571 GO:0046872
Amo12g0498 475 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Amo12g0498 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 223 - -
Amo12g0498 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 347 - -
Amo12g0498 475 SMART WD40_4 347 384 IPR001680 GO:0005515
Amo12g0498 475 SMART WD40_4 390 431 IPR001680 GO:0005515
Amo12g0498 475 SMART WD40_4 306 344 IPR001680 GO:0005515
Amo12g0498 475 SMART WD40_4 184 223 IPR001680 GO:0005515
Amo12g0498 475 SMART WD40_4 434 471 IPR001680 GO:0005515
Amo12g0498 475 SMART WD40_4 263 300 IPR001680 GO:0005515
Amo12g0498 475 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Amo12g0498 475 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Amo12g0498 475 Gene3D - 175 281 IPR015943 GO:0005515
Amo12g0498 475 Gene3D - 282 475 IPR015943 GO:0005515
Amo12g0498 475 PANTHER - 14 475 IPR044715 -
Amo12g0498 475 SUPERFAMILY WD40 repeat-like 178 471 IPR036322 GO:0005515
Amo12g0498 475 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Amo12g0498 475 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Amo12g0498 475 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Amo12g0498 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 383 IPR001680 GO:0005515
Amo12g0498 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Amo12g0498 475 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Amo12g0498 475 Pfam WD domain, G-beta repeat 188 223 IPR001680 GO:0005515
Amo12g0498 475 Pfam WD domain, G-beta repeat 349 383 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0498 Amo-Chr12 8028663 8031310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0498 249 435 Miscellaneous Gene Families AT5G08390 26.667 3.07e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo12g0498 WD40 1.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0498 - - ahf:112726849 770.77