Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo12g0498 | ATGGCTATTATAACAACAACAAAGAGAACTGAACGGTTCCGTCGAACAACACCACCAACATGCAAGTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGCATTCGAAAAAGCCCGATTCGTCCGTTGAGAAGATGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCAGAAGCTATATCTTCCGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTGTTGCTAAGGCTTGTGTGGATAAATCACGTAGTATTTGCAAATATTGGATGACTGACAATTGTGTGGACGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGGAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTAACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGACTCCTTTCAAACTGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAGGATGCTTTATTCTGGATCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGGCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACCAAATTGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTAGACTATTTACGAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTGGCGGACTCTTCTTTACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGTAG | 1428 | 0.4426 | MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKKPDSSVEKMASSSAKKAINCAPKAFKKPENCALKAVECRPEAEAISVEKPSKCEQKAEAISSVEKPSKCEQKAVLIEKTADVEDVATVAKACVDKSRSICKYWMTDNCVDGDLCQNLHSWFYGDGFSTLAKLHEHKEAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVNMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFETPFKLVATLSGHSKPVVCLAIGCHRMLYSGSMDHSIKVWDLDTFQCTMTLNGHTDVVTSLICWDNYLLSGSSDCTVNVWVCTEEGTLEVTYTHTHQIAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPGGLFFTGDGTGLLNVWKWLEE* | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo12g0498 | 475 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 14 | 475 | - | - | |
Amo12g0498 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 191 | 232 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 15 | 41 | IPR000571 | GO:0046872 | |
Amo12g0498 | 475 | SMART | c3hfinal6 | 154 | 179 | IPR000571 | GO:0046872 | |
Amo12g0498 | 475 | SMART | c3hfinal6 | 15 | 40 | IPR000571 | GO:0046872 | |
Amo12g0498 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 191 | 223 | - | - | |
Amo12g0498 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 313 | 347 | - | - | |
Amo12g0498 | 475 | SMART | WD40_4 | 347 | 384 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | SMART | WD40_4 | 390 | 431 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | SMART | WD40_4 | 306 | 344 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | SMART | WD40_4 | 184 | 223 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | SMART | WD40_4 | 434 | 471 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | SMART | WD40_4 | 263 | 300 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 153 | 180 | IPR000571 | GO:0046872 | |
Amo12g0498 | 475 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 331 | 345 | IPR019775 | - | |
Amo12g0498 | 475 | Gene3D | - | 175 | 281 | IPR015943 | GO:0005515 | |
Amo12g0498 | 475 | Gene3D | - | 282 | 475 | IPR015943 | GO:0005515 | |
Amo12g0498 | 475 | PANTHER | - | 14 | 475 | IPR044715 | - | |
Amo12g0498 | 475 | SUPERFAMILY | WD40 repeat-like | 178 | 471 | IPR036322 | GO:0005515 | |
Amo12g0498 | 475 | PRINTS | G protein beta WD-40 repeat signature | 371 | 385 | IPR020472 | - | |
Amo12g0498 | 475 | PRINTS | G protein beta WD-40 repeat signature | 210 | 224 | IPR020472 | - | |
Amo12g0498 | 475 | PRINTS | G protein beta WD-40 repeat signature | 331 | 345 | IPR020472 | - | |
Amo12g0498 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 354 | 383 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 313 | 353 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | Pfam | WD domain, G-beta repeat | 308 | 344 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | Pfam | WD domain, G-beta repeat | 188 | 223 | IPR001680 | GO:0005515 | |
Amo12g0498 | 475 | Pfam | WD domain, G-beta repeat | 349 | 383 | IPR001680 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo12g0498 | Amo-Chr12 | 8028663 | 8031310 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo12g0498 | 249 | 435 | Miscellaneous Gene Families | AT5G08390 | 26.667 | 3.07e-10 | 60.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Amo12g0498 | WD40 | 1.8e-05 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo12g0498 | - | - | ahf:112726849 | 770.77 |