Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0491 ATGAGTTTTGGAGGGTTTCTAGACAACAATTCCGGTGGCGGCGACGACGGTGGCGGTGGCGGCGGTGTGAGAAACATAGTTGAAATTCCATATAACAACGGTGGTGGTGGCACTACCAAGAACAACATCATCAACAACGATAATAATAGAACAACAATGCCCTCTGGTGCAATCTCACAGCCTCGCCTTTTAACAACTACTCCAACTTTGGCCAAATCAATGTTCAACTCACCTGGCCTCTCTCTAGCACTTCAAACGAATCTTGATGGACAAGGGGATGTGAATAACAACAACATTATGGGGAGTGAGAACAACAACAATAATTATGAGGGAAGTAATGGAGGATTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGAAGTGATAACATGGATGGTGCCTCCGGCGATGAACAAGATGCTGCCGACAACAATAATCCCAAAAGGAAAAAACGTTATCACCGACATACTCCTCAGCAAATACAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCCCATCCTGACGAGAAACAAAGGCTAGAACTTAGTAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACTCAATTGGAGCGCCATGAGAACACACTCCTAAGGCAAGAGAATGACAAGCTTAGAGCTGAGAACATGTCAATTAGAGATGCAATGAGGAACCCCATGTGTTCAAATTGTGGTGGTCCTGCCATAATTGGTGAGCTTTCTCTTGAGGAACAACATCTTAGGATTGAGAATGCAAGACTAAAGGATGAATTAGACCGGGTTTGTGCCCTCGCCGGCAAGTTCTTGGGCCGGCCCATTTCGTCCATGGGCGGGCCCCACCCGTTGCCAAATTCAAGTTTGGAGCTTGGGGTTGGCAACAATAACAATGGCTATGGTTGTAACTTGAGCATAAATGTGCCTAATAGCTTGCCTTTGGGGCCGGAATTTGGGGTGAATTTGTCTAGTCCTTTGGGTATGGTTTCCGGGCCGGCGATCACTCGGCCGCAGCCGAGCGCGGTGGTTGGCGGATTCGATAGGTCAATGGAGAGGTCAATGTTGTTGGAGCTTGGTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCACAAAGTTGTGAGCCTCTTTGGATAAGGAGTTTGGAAATTGGAGGAAGGGAAGTACTTAACCATGAGGAGTATATTAGGACATTCCCTAATCCTTGCATTGCTTTAAGGACTAATTCCTTTGTCTCTGAGGCTTCTAGGGAAACTGGCCTTGTCATCATAAATAGCTTGGCTCTTGTTGAGACTTTAATGGATGCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCAACCACTGAAGTGATATCGAATGGAATAAACGGTAGCAGAAATGGAGCACTTCAACTAATGCATGCGGAGCTTCAAGTTCTATCGCCATTGGTACCAGTTAGAGAAGTGAATTTCCTTCGATTTTGCAAGCAACACGCAGAAGGGGTGTGGGCAGTGGTGGATGTCTCCATTGATGCTATCAGAGAAACTTCTTCTGCCGGTGCCCCAACTTTTGTTAATTGCAGAAGACTCCCTTCTGGCTGTATAGTACAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCCGAATACGAGGAAAGGGAAGTTCATCAGTTATATAGAGCCTTGTTGAGCTCTGGCATGGCCTTCGGCGCCCAGCGGTGGATCGCCACCCTACAGCGCCAGTGCGAGTGCCTCGCCATCCTCATGTCTTCTACTCAACCTTCTAGAGACCACTCAGCAATAACTGCAAGTGGTAGGCGCAGCATGCTGAAGCTGGCACAGAGGATGACCAACAACTTCTGTGCCGGAGTGTGCGCCTCCACGGTGCACAAGTGGAACAAGCTCAACAATACCGGCAACACTGTCGATGAGGATGTTAGGGTAATGACAAGGAAGAGCGTGGACGATCCTGGGGAGCCACCCGGGATCGTCCTCAGCGCTGCCACGTCAGTGTGGCTCCCAGTCTCGCCGCAGAGGCTGTTCGACTTCCTCCGCGACGAGAGGTTGAGGAGCGAGTGGGACATACTATCCAATGGTGGGCCCATGCAAGAGATGGCCCACATTGCAAAGGGACAGGACCATGGCAACTGCGTCTCCCTCCTTAGAGCTGGTGCAATAAATTCAAATCAAAGTAGCATGTTGATACTTCAAGAGACATGCATAGATGCTGCTGGCTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCGATGCACGTGGTAATGAACGGTGGTGATTCTGCTTACGTGGCATTATTGCCTTCTGGGTTTGCGATTGTTCCTGATGGGCCTGGGCCTCGTGGGGCCCAAAATGGTGGCGCCGAAGCCAATGGCGGCGATGACCTTGGTGGTGGGGCGCGTGGGAGTGGGTCCCTTTTGACGGTGGCATTTCAGATTCTTGTGAATAGTCTCCCTACGGCCAAGCTCACGGTAGAGTCGGTGGAAACTGTGAACAACCTCATTTCATGCACAGTTCAAAAGATAAAAGCAGCACTTCGATGTGAAAGTTGA 2607 0.491 MSFGGFLDNNSGGGDDGGGGGGVRNIVEIPYNNGGGGTTKNNIINNDNNRTTMPSGAISQPRLLTTTPTLAKSMFNSPGLSLALQTNLDGQGDVNNNNIMGSENNNNNYEGSNGGLRRSREEEHESRSGSDNMDGASGDEQDAADNNNPKRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGELSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSMGGPHPLPNSSLELGVGNNNNGYGCNLSINVPNSLPLGPEFGVNLSSPLGMVSGPAITRPQPSAVVGGFDRSMERSMLLELGLAAMDELVKMAQSCEPLWIRSLEIGGREVLNHEEYIRTFPNPCIALRTNSFVSEASRETGLVIINSLALVETLMDANRWAEMFPCMIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDAIRETSSAGAPTFVNCRRLPSGCIVQDMPNGYSKVTWVEHAEYEEREVHQLYRALLSSGMAFGAQRWIATLQRQCECLAILMSSTQPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNNTGNTVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRAGAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGPRGAQNGGAEANGGDDLGGGARGSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALRCES* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0491 868 Coils Coil 250 270 - -
Amo12g0491 868 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Amo12g0491 868 CDD homeodomain 151 209 IPR001356 GO:0003677
Amo12g0491 868 Gene3D - 138 225 - -
Amo12g0491 868 MobiDBLite consensus disorder prediction 93 159 - -
Amo12g0491 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 105 865 IPR042160 -
Amo12g0491 868 SUPERFAMILY Bet v1-like 360 596 - -
Amo12g0491 868 SMART HOX_1 150 213 IPR001356 GO:0003677
Amo12g0491 868 Pfam START domain 371 596 IPR002913 GO:0008289
Amo12g0491 868 MobiDBLite consensus disorder prediction 33 60 - -
Amo12g0491 868 SUPERFAMILY Homeodomain-like 134 209 IPR009057 -
Amo12g0491 868 ProSiteProfiles START domain profile. 359 599 IPR002913 GO:0008289
Amo12g0491 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 105 865 - -
Amo12g0491 868 Coils Coil 203 235 - -
Amo12g0491 868 CDD START_ArGLABRA2_like 363 595 - -
Amo12g0491 868 SUPERFAMILY Bet v1-like 624 861 - -
Amo12g0491 868 MobiDBLite consensus disorder prediction 1 21 - -
Amo12g0491 868 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Amo12g0491 868 Pfam Homeodomain 152 207 IPR001356 GO:0003677
Amo12g0491 868 Gene3D - 431 595 IPR023393 -
Amo12g0491 868 MobiDBLite consensus disorder prediction 115 130 - -
Amo12g0491 868 MobiDBLite consensus disorder prediction 93 114 - -
Amo12g0491 868 SMART START_1 368 596 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0491 Amo-Chr12 7864554 7873820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0491 1 868 Homeobox Transcription Factor Family AT3G61150 63.490 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo12g0491 START 8e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0491 K09338 - gmx:100818372 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0491 12 7864554 7873820 Amo12g0491 12 7864554 7873820 ECH