Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0490 ATGAATATGATGAGAAGGTTGAAGAGCATTGCTTCTGGCAGGACATCCATTTCTTCAGATCCTGGAGGTGATTCTAGCACGAAAAGAGCTAAGTTTGATCAGGAAACCACAGGGAAAGTCAATGATGAATCGATTACCATAGACAAAGGCGGCCAAGATCAGGAAGATTTTGTAGATGCACAAATGGGGGATGCTGTTGGCACATCAGATGTATCTTCGGTAGCCAAAAATGAAAAGTCAGGTTTTGATCAACTTCCGAAAGAATTGCATGATATGAAAATTGCTGATGAGAAAAGGAAAAAGAACAATGAGAAGGATGTAGAAGCAACTGTAGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGCCGAGATGGACAACCAAAGCAGACAATATCGTACATGGCTGAACGCGTGGTTGGAACTGGTTCTTTTGGAGTTGTTTTTCAGGCTAAGTGCCTCGAGACTGGTGAACCGGTTGCCATAAAGAAGGTTTTGCAAGACAAGAGATATAAGAATAGGGAACTTCAGGTTATGCGCATGCTTGAGCATCCTAATGTTGTGCGACTAAAGCACTGTTTCTTTTCAACTACGGATAAGGATGAGTTGTACCTCAACCTGGTTTTGGAGTATGTTCCCGAAACTGTTTACAAGGTTTCAAAGCAGTTTATTAGGATGCACCAATATATGCCTATCATTAATGTGCAACTTTATACATATCAGATATGCCGTGCATTGAATTATTTACATGAAGTCATTGGCGTCTGTCATCGTGACATCAAGCCCCAGAATTTATTGGTCAATCCTCAGACCCATGAGTTGAAGATATGCGATTTTGGTAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCGAGGTATTATAGGGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTCGGTTGTGTTTTGGCTGAGCTCCTTCTAGGACAGCCATTATTTCCAGGAGAGAGCGGGGTTGATCAGTTAGTAGAGATCATTAAGATCTTGGGAACACCTACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTCAAGTTTCCTCAGATTAAAGCGCACCCGTGGCACAAGGTTTTCAACAAGAAACTGCCACCTGAAGCAGTGGATCTTGTGTCAAGGCTACTTCAATATTCACCAAATCTACGTTGCACTGCGTTGGCTGCATGTGCACACCCATTCTTCGATGATCTACGGGACCCGAATACATGCCTGCCAAATGGGCGACCGCTGCCGCCGTTGTTCAATTTCACTGAAGCAGAACTGGCAAATGCACCTGATGAGTTGCGTCAACGTCTCATTCCCGAGCATGCGAGGAGTTCGAGCTGA 1416 0.4329 MNMMRRLKSIASGRTSISSDPGGDSSTKRAKFDQETTGKVNDESITIDKGGQDQEDFVDAQMGDAVGTSDVSSVAKNEKSGFDQLPKELHDMKIADEKRKKNNEKDVEATVVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDKRYKNRELQVMRMLEHPNVVRLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKQFIRMHQYMPIINVQLYTYQICRALNYLHEVIGVCHRDIKPQNLLVNPQTHELKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFNKKLPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDDLRDPNTCLPNGRPLPPLFNFTEAELANAPDELRQRLIPEHARSSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0490 471 SUPERFAMILY Protein kinase-like (PK-like) 139 450 IPR011009 -
Amo12g0490 471 MobiDBLite consensus disorder prediction 1 82 - -
Amo12g0490 471 CDD STKc_GSK3 135 427 IPR039192 -
Amo12g0490 471 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0490 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Amo12g0490 471 PANTHER SHAGGY-LIKE KINASE 6 469 - -
Amo12g0490 471 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Amo12g0490 471 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0490 471 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0490 471 MobiDBLite consensus disorder prediction 9 25 - -
Amo12g0490 471 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Amo12g0490 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 469 - -
Amo12g0490 471 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0490 Amo-Chr12 7811962 7816845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0490 146 427 Core Cell Cycle Gene Families AT1G76540 37.586 9.15e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Amo12g0490 Pkinase 2.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0490 K00924 - gmx:100811346 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0490 12 7811962 7816845 Amo12g0490 12 7811962 7816845 ECH