Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0480 ATGATGGGTTCAGATACCACTTTGGTTACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTATGTGCACAAGAATCAATTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTGTGTCATATGTTTGGCAGATTTTAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCAATCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGAAAACAATCCACTTGCCCGGTATGCCGTCTGCCGTTAAAAAACTCATCTGAGGCGAAACATGTTAGAATTGTTACATTTACCATGAGCCAGCCTCTTTGA 330 0.4212 MMGSDTTLVTTVIGFGMSATFIVFMCTRINCGRIRGSVESRMMCVICLADFREREVLRIMPKCNHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRIVTFTMSQPL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0480 109 SUPERFAMILY RING/U-box 38 92 - -
Amo12g0480 109 PANTHER OS02G0676500 PROTEIN 1 41 - -
Amo12g0480 109 PANTHER OS11G0150450 PROTEIN 1 41 - -
Amo12g0480 109 SMART ring_2 44 85 IPR001841 -
Amo12g0480 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 103 IPR013083 -
Amo12g0480 109 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Amo12g0480 109 PANTHER OS02G0676500 PROTEIN 43 107 - -
Amo12g0480 109 PANTHER OS11G0150450 PROTEIN 43 107 - -
Amo12g0480 109 Pfam Ring finger domain 43 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0480 Amo-Chr12 7694789 7696033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0480 33 107 C3H Transcription Factor Family AT3G03550 48.000 1.67e-18 77.0