Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0476 ATGCCTCGTGGTACACTTGAAGTTGTTTTGATCAGTGCCAAAGGCCTTGATGGCAGTGATTTCCTCGCAAACATTGATCCTTATGTGATTCTCTCATACCGTTCTCAAGAGCACAAAAGCACTGTGGCAGAAGGTGCTGGATCCAACCCACAATGGAATGAAAGCTTTCTTTTCACTGTTTCTGACAGTGCTTGTGAGCTTAATCTGAAGATCATGGATAAAGACAATTTTAGTCAAGATGATTTCCTTGGCGAGGCAACGATTACTCTTGATGCAGTGTTTGATGAGGGTAGCCATCCAGAGACTTCTTACAATGTTGTGAAGGACAAAGAATACTGTGGAGAGATCAAGGTTGCTCTCACTTTTACTGCTGAGAGAGGTGGTGCTGGCCGGGACGAATACGGTGGACAGGAGGAGAGTTATGGTGGATGGAATGAATCAGCCAGGGACTTTTAG 456 0.4496 MPRGTLEVVLISAKGLDGSDFLANIDPYVILSYRSQEHKSTVAEGAGSNPQWNESFLFTVSDSACELNLKIMDKDNFSQDDFLGEATITLDAVFDEGSHPETSYNVVKDKEYCGEIKVALTFTAERGGAGRDEYGGQEESYGGWNESARDF* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0476 151 Gene3D C2 domain 2 124 IPR035892 -
Amo12g0476 151 Pfam C2 domain 4 105 IPR000008 -
Amo12g0476 151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 123 IPR035892 -
Amo12g0476 151 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Amo12g0476 151 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 151 - -
Amo12g0476 151 MobiDBLite consensus disorder prediction 128 151 - -
Amo12g0476 151 PANTHER C2 DOMAIN-CONTAINING 1 151 - -
Amo12g0476 151 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0476 Amo-Chr12 7657239 7659251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0476 4 118 C2H2 Transcription Factor Family AT4G21160 30.435 6.00e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0476 - - adu:107473142 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0476 12 7657239 7659251 Amo02g0612 02 7958792 7960756 hybridization