LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g0473	ATGGCCTCCTTCTTTAACCTATTGATGATCATCATCTTTAGCTTCAAGAATTTTGCATCCACAAAAGCACAGGGTCCTAACTATCTCTTCATATATTGCGTGCTTCAAAACTTTACCGCCAACAGCACCTACCAAACAAACCTCAGGACTCTCTACTCTTCCTTATCTTCCAAAGCCAAAAACAGCATCGAATTCTACAACACGACCATCCGCCACGCCCACTCCGACGACACAGCTTACGGAATGTTCATGTGCAGGGGCGACACACCCTCCGCGCAATGCGGAGAGTGCGTCCAAAACGCAACCCTAACGCTGTTAAGCAATGGCTGTAAATCCTCCATAGAAGGGCTTGTATGGTACGACCAGTGCATGGTTAGGTATTCAAACACGTATTTCTTCTCCAAGTTATCCATGGAGCCATTCAAGGAGTATGTTAGTCCTACCAAACAGATTTACCAAGGAACCTTCAACAGAACCTTGTTTGAGACACTGAACAAGACGGCGGAGGAGGCGGCCAAGGCGCCGACCGGAAAGAAGAAGTTTGCGACGGAAGAAGCAGATCTGCCGGAGTTTCAGAAGCTTTACTGTTTGGCTCAGTGCACACCGGATCTGTCGCCGGAAGATTGCAGGAGTTGTTTGAACGTTTCTATAAACGGGAACGTTCCGCGGTTTGAGCTTTACACTTTCTATGGATCTCCATCATCCCCTGCTCCAGCACCAACAGGTGTACTTCTCACTCCCCCCACAGAAGATAAGAGAAGTCGATCACGAACAATTATCTTAATTGTTGTTCCTATTGTTGTGGTGATACTCTTCACTTGTTTTTGCTATTTGCTAAGAAGAAGAGCAAGAAAGAGCCTTAAAACTATTCTCAGAGAAAATTGTAATACCACTTTAGAAGGATTGCAATTTGATTTGAACGTACTTAAAGTGGCTACAAACAACTTTTCACTTGAGAACCTTATTGGCAAGGGAGGATTTGGAGAAGTTTATAAGGGCATTCTTCTTGATGGACGATTTATAGCTGTGAAAAGACTGAATACAAGTTCTAGACAAGGTTCAGATGAATTCAAGAACGAGATTTTATTGATAGCCAAACTTCAACACAGAAATCTTGTAACTTTGATAGGCTTTTGTCTCGATGAGCAAGAAAAAATTCTTATTTACGAATATATGCCAAATAGAAGTCTCGACTACCATTTATTTGGTGATCAACAACATAAATTAAGTTGGGTTGAACGTTTTAAAATTATTAAAGGGACTGCTTCAGGACTTCTTTATTTGCATGAATATTCTAGATTCAAAGTTATTCATCGAGATCTAAAATCTAGTAACATTTTATTAGATGAAGATATGAATCCAAAAATTTCAGATTTTGGTATGGCACGAATAGTTGATATAAATCAAGAAAAAGGAGAAACGAACAGGATTGTTGATATTTTTAGTTTTAGAGTCATAATTCTAGAACTTATTTACGGAGAAAAGAATGCACGCTTTCATGAATCACATGAAGAAAGCCTTTTAAGTTATGTTTGGAGACAATGGCAAGATGGAACACCTTTCAACACATTGGATCCAAATCTGAAAGAAAGTTATCATGTGGTGGAAGTCATGAAATGCATTCAAATTGGTTTATTATGTGTTCAAGAGAATATAAATGATAGACCCTCAATGGTGACAGTTGTTTCATATCTTAATAATCTTTCACTTGAATTACCATCTCCACATGAACCAGCATTCTTCACTCTTGGTAGATTCATGGATCCTAAAATCACAAATGAATCAAGTTCTAGCCAATCTGCCAAGAGTTTATTTTCAGTGAATGAAATGTCAATAAGTAAATTTCATCCTCGGAACTTTGACTTTAATGCAAGTTTTTGGGAAATTTTCCTTTTTCCTTATTGGTTCAAATCCCATTCAAAGTGA	1926	0.3873	MASFFNLLMIIIFSFKNFASTKAQGPNYLFIYCVLQNFTANSTYQTNLRTLYSSLSSKAKNSIEFYNTTIRHAHSDDTAYGMFMCRGDTPSAQCGECVQNATLTLLSNGCKSSIEGLVWYDQCMVRYSNTYFFSKLSMEPFKEYVSPTKQIYQGTFNRTLFETLNKTAEEAAKAPTGKKKFATEEADLPEFQKLYCLAQCTPDLSPEDCRSCLNVSINGNVPRFELYTFYGSPSSPAPAPTGVLLTPPTEDKRSRSRTIILIVVPIVVVILFTCFCYLLRRRARKSLKTILRENCNTTLEGLQFDLNVLKVATNNFSLENLIGKGGFGEVYKGILLDGRFIAVKRLNTSSRQGSDEFKNEILLIAKLQHRNLVTLIGFCLDEQEKILIYEYMPNRSLDYHLFGDQQHKLSWVERFKIIKGTASGLLYLHEYSRFKVIHRDLKSSNILLDEDMNPKISDFGMARIVDINQEKGETNRIVDIFSFRVIILELIYGEKNARFHESHEESLLSYVWRQWQDGTPFNTLDPNLKESYHVVEVMKCIQIGLLCVQENINDRPSMVTVVSYLNNLSLELPSPHEPAFFTLGRFMDPKITNESSSSQSAKSLFSVNEMSISKFHPRNFDFNASFWEIFLFPYWFKSHSK*	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g0473	641	Gene3D	-	141	225	IPR038408	-
	Amo12g0473	641	Gene3D	-	26	132	IPR038408	-
	Amo12g0473	641	ProSiteProfiles	Protein kinase domain profile.	316	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo12g0473	641	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	242	591	-	-
	Amo12g0473	641	Gene3D	Transferase(Phosphotransferase) domain 1	392	574	-	-
	Amo12g0473	641	ProSiteProfiles	Gnk2-homologous domain profile.	138	248	IPR002902	-
	Amo12g0473	641	SUPERFAMILY	Protein kinase-like (PK-like)	301	591	IPR011009	-
	Amo12g0473	641	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	242	591	-	-
	Amo12g0473	641	ProSiteProfiles	Gnk2-homologous domain profile.	26	132	IPR002902	-
	Amo12g0473	641	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	17	219	-	-
	Amo12g0473	641	SMART	serkin_6	316	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo12g0473	641	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Amo12g0473	641	Pfam	Salt stress response/antifungal	153	216	IPR002902	-
	Amo12g0473	641	Gene3D	Phosphorylase Kinase; domain 1	279	391	-	-
	Amo12g0473	641	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	17	219	-	-
	Amo12g0473	641	Pfam	Protein kinase domain	318	470	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo12g0473	641	ProSitePatterns	Protein kinases ATP-binding region signature.	322	344	IPR017441	GO:0005524
	Amo12g0473	641	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g0473	Amo-Chr12	7626897	7632102	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g0473	3	618	Receptor kinase-like Gene Family	AT4G05200	39.706	5.62e-154	458

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Amo12g0473		Pkinase	1.1e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g0473	-		-	ahf:112729661	1099.73