Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0465 ATGGGTTCAATTCTCAAATTTCGTAACATATATGGTTCCTTTAAATGCTTTCATTCTAAACCTAATTGGGGTTCCGGTGCTTCAGATAAAACCCCCAAATTGGAACCAAATAGGAATAACAATAGGGTAGGGATTTTTTGGGACTTAGATAACAAGCCACCAAACTCAATTCCACCTTTTGAAGTTGCCAATAAGCTTAGAATTGTTGCATCTTCATTTGGGGTTGTTAGGCATATGGTAGCTTATGCAAATAGTCACACTTTCACCGGTGTCCCACACGCTGTTCGGCAGTGGAGGAAAGAGAAGGAGCTGTATAACCGATTGGAGAGCAAAGGCGTCATCAAGCGGAATGAGTCTCATGTTTGCAGGGTTTGTGGGAGAAAGTTTTACACTAATGAGAAGCTTGTTAACCATTTCAAGCAGCTACATGAGAGCGAGCAAATGAAAAGGGTGAACCAGATAGCATCGGCAAGGGGGAACCGGAGGGTGAAGTTGGTGGCAAAGTATTCGATGAAGATGGAGAAGTATAAGAAGACTGCAAGGGATATTCTTACTCCAAGGGTGGGGTATGGTTTGGCAGATGAGCTGAAACGCGCAGGATTTTGGGTTCAGTCTGTGTTGGATAAGCCACAACTGCGGATCATGCATTGGAAAGTCACATGGTGGATATGA 672 0.436 MGSILKFRNIYGSFKCFHSKPNWGSGASDKTPKLEPNRNNNRVGIFWDLDNKPPNSIPPFEVANKLRIVASSFGVVRHMVAYANSHTFTGVPHAVRQWRKEKELYNRLESKGVIKRNESHVCRVCGRKFYTNEKLVNHFKQLHESEQMKRVNQIASARGNRRVKLVAKYSMKMEKYKKTARDILTPRVGYGLADELKRAGFWVQSVLDKPQLRIMHWKVTWWI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0465 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 148 IPR013087 -
Amo12g0465 223 PANTHER - 31 212 - -
Amo12g0465 223 ProSitePatterns Zinc finger C2H2 type domain signature. 122 143 IPR013087 -
Amo12g0465 223 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 31 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0465 Amo-Chr12 7567461 7568132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0465 42 211 C2H2 Transcription Factor Family AT4G12240 64.118 1.82e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g0465 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0465 - - aip:107624837 456.062