Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0456 ATGGATGGATTGGATGGTTTGATAGAAAGGCTTTTGGAAGCAAAGAAGAATGTTGGCAAACGGATTCATCTTGTAGAGTCAGAAATTCGCAACATTTGTATCACCGCAAAAGAAATCCTTCTTAGCCAACCYAACCTTCTCGAGTTGGAAGCTCCCATCAATGTTTGTGGCGACATACACGGGCAATACCCAGACCTATTGCGGCTGTTTGAATATGGCGGTTTTCCGCCGCAATCAAACTACCTGTTCCTTGGAGACTACGTGGACAGAGGAAAACAGAGCATAGAAACAATATGCCTCCTTCTTGCGTACAAAATCAAATACCCTGAAAACTTTTTCCTTCTGCGTGGAAACCATGAATGCGCCTCAATCAACAGAATATACGGATTCTACGACGAGTGCAAGCGGAGATTCAGTGTTCGTTTATGGAAGGTGTTTACAGATTGCTTCAACTGTTTGCCAGTGGCTGCAGTAATTGATGAGAAGATCCTGTGCATGCATGGAGGGATATCTCCTGAGATTGAGAACTTGGATCAAATCAAAGCCATTGAAAGGCCCGTGGATGTGCCAGATCAAGGGCTCTTGTGTGATCTTCTTTGGGCAGATCCTGATAGGCAAATCATAGGGTGGGGAGAGAATGATAGAGGTGTTTCCTACACCTTTGGACCTGATAAGGTTGCTGAGTTCTTGAAGAAACATGATCTCGATCTATATGCAGCTAGTGACCATATTTTCATGTCACCAAACTATTGTGGAGAGTTCAACAATGCAGGAGCACTTATGTGTGTGGATGAAACCTTACTCTGTTCCTTTCAGATTCTCAAACCCTTGACAGCAAAGACACCGTAG 849 0.4393 MDGLDGLIERLLEAKKNVGKRIHLVESEIRNICITAKEILLSQPNLLELEAPINVCGDIHGQYPDLLRLFEYGGFPPQSNYLFLGDYVDRGKQSIETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDCFNCLPVAAVIDEKILCMHGGISPEIENLDQIKAIERPVDVPDQGLLCDLLWADPDRQIIGWGENDRGVSYTFGPDKVAEFLKKHDLDLYAASDHIFMSPNYCGEFNNAGALMCVDETLLCSFQILKPLTAKTP* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0456 282 SMART pp2a_7 24 278 IPR006186 GO:0016787
Amo12g0456 282 Gene3D - 2 281 IPR029052 -
Amo12g0456 282 Pfam Calcineurin-like phosphoesterase 52 239 IPR004843 GO:0016787
Amo12g0456 282 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 280 - -
Amo12g0456 282 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 280 - -
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Amo12g0456 282 PRINTS Serine/threonine phosphatase family signature 240 256 IPR006186 GO:0016787
Amo12g0456 282 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Amo12g0456 282 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Amo12g0456 282 SUPERFAMILY Metallo-dependent phosphatases 20 278 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0456 Amo-Chr12 7425117 7428259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0456 31 237 Calmodulin-binding Proteins AT5G63870 31.984 1.84e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0456 K06269 - gmx:100804212 504.982