Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0448 GCCAAGGGTGCGGATGCAATTCTWTCCTTTGAAAAGTTCTGCTGCAATCTCCCCAGATCTCTTCTTCAGGTTCCGATTGACGAAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTTTATGCAACAGGATCCAAAATGAGTCACTAAGAAAAATGAACCACCCAAATATTGTGAAGCTAAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTATTTTTGAGTACATGGAATGCAACCTGTACCAACTTATGAAAGACAGGGAGAAGATGTCTTCTGAGGGTCTTGCTTATATGCACCAGCGGGGATACTTCCACCGTGATCTGAAGCCTGAGAACTTGCTGGTTACCAAGGATATCATAAAAATTGCTGATTTTGGCCTAGCACATGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGGTGGTATCGTGCTCCTGAAGTGCTACTTCAATCTTATCTGTATAGCTCCAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAACTGTTCTCTCTTCGTCCTCTTTTCCCTGGTGCCAGTCCTGGTTTTTGTGAATCTACTTCAAGTTTCAAATGGCACTTTCAAATATGTGCTACTGACCTACTGTACCAATTTCAATATGATAATTCCGCTGAATTCAAAGGAAAAGAAAGAAAAATAGAAAACAAGTACTTTAGTAGCACAAAGAGTCAACTTTAA 741 0.4062 AKGADAILSFEKFCCNLPRSLLQVPIDEELLQEVVNMGFDRNQLVESLCNRIQNESLRKMNHPNIVKLKEVIRESDILYFIFEYMECNLYQLMKDREKMSSEGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAHEISSQPPYTEYVSTRWYRAPEVLLQSYLYSSKVDMWAMGAIMAELFSLRPLFPGASPGFCESTSSFKWHFQICATDLLYQFQYDNSAEFKGKERKIENKYFSSTKSQL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0448 246 CDD UBA_SnRK1_plant 26 55 - -
Amo12g0448 246 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0448 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Amo12g0448 246 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 25 48 IPR015940 -
Amo12g0448 246 Gene3D Transferase(Phosphotransferase) domain 1 83 245 - -
Amo12g0448 246 Pfam Protein kinase domain 55 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0448 246 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 53 194 - -
Amo12g0448 246 Gene3D Phosphorylase Kinase; domain 1 35 82 - -
Amo12g0448 246 SUPERFAMILY Protein kinase-like (PK-like) 55 195 IPR011009 -
Amo12g0448 246 SMART serkin_6 28 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0448 246 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 53 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0448 Amo-Chr12 7324473 7326496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0448 28 192 MAP Kinase Gene Family AT4G11330 37.912 5.42e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Amo12g0448 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0448 K08829 - gmx:100810150 267.7