Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0442 ATGAATGTTGAGAGGCAGGATGGATCCTCTAAGCACCTTTCACAAAATGACTTGTTAGCACAAGTTCTCGGAAAGGAGCACCCAGGACGAGTTCGTGCCCTAGGTGCTGGACCATGTCCCACCCAAGTCTTTGGTAACGCTGCTAGACAACCATCGGGTTCTGCAGAGTCCAATGCAGAGGATAAGAGGATGATTGCAGAATTGACGGCTAAGCTAGAAAAAGAGTGGGCGAAGAGACAGTCAATACATAAGGTTCTCTTCCTCCCCTTCCCCTCCCCTTTTCCCTCCGTCTCAATCGCACCCTCTTCCTCCCCTTTCCCCGCCGTCGCAATCGCACCCTCTTCCTCCTCTCCCCCTCTGACCCAATCGCACCGCGGTTCCAAGCACACAAACAGCCTCACCTCTGACGACGACGGTTATCTTCGGCAGTTGATGGCTTCGCCGTCTCCATCAATGGAAAGAAGGGTTGCCGGGGATGAAGATACCACTAGGGGCGTGCACGTCGCCGATGAACCAGAAATGTCTGACGGAGCAGAGCACGGAGTTGGATCGTTTGAGGGTGAAGGCTTTGCAGGGATGCAGTCAGACGAGTACGACTTTCAGGAAGATGAAACAGAACACGACCATCATGCAGAGGCCGATGTCGACAATGGGGATGCGGTTGAATTGGAAGACAGTTTGGACGGCGCCGGAGGTATGTCTGACAATTATGCGGAAGACGAGTTTTACGCTGTTGATTCCGTGGAGTCGATAGGTTGGATTGATTTTTTGAACTTGAGCGAGGAGGATGTTTTCCGGTTTAATTTCGCAGACGTTGACATTGCATTTGAGTTCTACCAGCAATATGCAAAGCACCATGGCTTCGGGGCGAGACGTTCCAGAAGCGAAAAACGCGGCGAAGTAAGGATACGGCAGGAGTTCGTGTGCCACCGACAAGGGTACCGATCCCCGAAGTTCTACTCGATGCCTAACCGGCAAAAGAGGCCGAGGGCCGAGACACGTTGTGGATGCCCTGCAAGGATGCTACTCCGCATGGACGATGAATCAGGACGTTGGCTCGTTGTCTACACTGAGTTTTTACGTCATTTCCATCGATGCTTGATGTTCGTGCGTGCAAAGGAGGTGGAGGCTGATTTCGAGTGTGCAAAGGGCGACCCTGTTATGACCACCAACCTGAAACAGCTGGAGCGGAGTGCAGCCGAGAACTACACTCGTGCAATATTCTATTTGTTTGTTCCCATTCTTGACAGGGCCTGTGCAATGAGGGTGGTTGACTCTGAAGACAACGGTTCCTATTTTATCCACACCGTCTCTCGATACGGCACTCCGGGGAAGGATTGGCGTGTTGTTGCAACATCTGATACGAGGGAGGTCCGATGCACGTGCATGAGAATGGAATGTTTCGGGGTCCTCTGCGAACATATAATTGCGGTGCTTGTTCTTAACAATGTTCATGAGATCCCGAGGTCCCTGATATTGCCGAGATGGACCAAGGATGCAAAACTTGTGGCGGTGCAGTCGATGGGCGTGATTTGGGATTCTGTACAACTGACGCAACACTGGTGCCTGATGGATTGGTACCAAAAAGTGTGCAAGATTGCATGTCACAGCACTGAAAAGTTCCAGTTTGCAAGAGACACTGCCATGCTGATGCTGAAGCACTTTGAGAACGAAGATGCAGGGGACACCAGTTTTCCACCCGAGGGGCCACCTACTGAAGGTGGAAGGGGCCCGGCGCAGAATCCACCCAGGCGCAATACAAAGGGTAACGGTGCTCATGGTGGAAAGAAAACCCAACGATGTCGTTTCTGCCGGGAGGTGGGACACAACAGGACGACGTGTCCGGAACGCCGCACAATGGAGTCATCCAGCGCAGTTGCAGATGACATGGATTCGATGGACACTGACATGCTCTATGATAACCTATCCGGCGATCTGTATGCGACCGCCGAGATTCATTCGTTCCAATGCTTCGATAGTGACACGCAGGCTGGGTTTGCTAACAGCGACTTCGCTGGGACCAACACGTCCGGGCCTGTCATGTCTCTCGCCGATTGA 2058 0.5248 MNVERQDGSSKHLSQNDLLAQVLGKEHPGRVRALGAGPCPTQVFGNAARQPSGSAESNAEDKRMIAELTAKLEKEWAKRQSIHKVLFLPFPSPFPSVSIAPSSSPFPAVAIAPSSSSPPLTQSHRGSKHTNSLTSDDDGYLRQLMASPSPSMERRVAGDEDTTRGVHVADEPEMSDGAEHGVGSFEGEGFAGMQSDEYDFQEDETEHDHHAEADVDNGDAVELEDSLDGAGGMSDNYAEDEFYAVDSVESIGWIDFLNLSEEDVFRFNFADVDIAFEFYQQYAKHHGFGARRSRSEKRGEVRIRQEFVCHRQGYRSPKFYSMPNRQKRPRAETRCGCPARMLLRMDDESGRWLVVYTEFLRHFHRCLMFVRAKEVEADFECAKGDPVMTTNLKQLERSAAENYTRAIFYLFVPILDRACAMRVVDSEDNGSYFIHTVSRYGTPGKDWRVVATSDTREVRCTCMRMECFGVLCEHIIAVLVLNNVHEIPRSLILPRWTKDAKLVAVQSMGVIWDSVQLTQHWCLMDWYQKVCKIACHSTEKFQFARDTAMLMLKHFENEDAGDTSFPPEGPPTEGGRGPAQNPPRRNTKGNGAHGGKKTQRCRFCREVGHNRTTCPERRTMESSSAVADDMDSMDTDMLYDNLSGDLYATAEIHSFQCFDSDTQAGFANSDFAGTNTSGPVMSLAD* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0442 685 Pfam FAR1 DNA-binding domain 277 366 IPR004330 -
Amo12g0442 685 MobiDBLite consensus disorder prediction 113 138 - -
Amo12g0442 685 PANTHER OS03G0181600 PROTEIN 357 558 - -
Amo12g0442 685 MobiDBLite consensus disorder prediction 113 232 - -
Amo12g0442 685 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 268 352 IPR031052 GO:0006355
Amo12g0442 685 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 357 558 IPR031052 GO:0006355
Amo12g0442 685 SUPERFAMILY Retrovirus zinc finger-like domains 586 621 IPR036875 GO:0003676|GO:0008270
Amo12g0442 685 MobiDBLite consensus disorder prediction 559 598 - -
Amo12g0442 685 PANTHER OS03G0181600 PROTEIN 268 352 - -
Amo12g0442 685 MobiDBLite consensus disorder prediction 203 217 - -
Amo12g0442 685 ProSiteProfiles Zinc finger SWIM-type profile. 447 483 IPR007527 GO:0008270
Amo12g0442 685 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0442 Amo-Chr12 7217688 7222495 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g0442 FAR1 5.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0442 - - aip:107647116 650.588