Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0436 ATGAATGTGGTGTTAGGCATGGCTTCTCTACTCCCTCCAACTCCAACTGTCACTGCCACATTCCAACAGCATTATTGTTATTATAATTTGCATAACAACCAAATAGCGGCAATCTGCTGCTTCTCACCTCCTCACAAAAAACTACTCTCCATCACTTCAAAGAGGAAGAGTAGGAGGGGCCTCATCAGGTGCAATGCTTTCTTTGATGACGTGGCAACCGGTTTGTTGGAGTTGGAGAATGCTCCTTACTTTCAGGGCTTATCGGAGACGCAGCGGTGGTGGATAGTGGTTTTTGGCGGCCTTGCTTGGATTTATTTCACTGCAAGGCCCGGGGTTCTCGTCGGCGCCATCGATGCATACCTTCTGGCCCCTCTTCAGCTCGCGCTGGACAGTCTTTCCGGAAGGAGGAACCTCAAGAGGACTGATTTTCTCGTCGGAGAAAAGCTCGGCGAGGGGTCCTTCGGTGTTGTGTACTCTGGTGTACTCCTCCCAAAGAATCTCAATGACTCGCCGGCGGACCAGAAGAGGCCACGACGGCCTCCGCCTCGGTCTGCTCTTGTTCCCCAATCTCAATCTAAGGACAAAGTCATTCTTAAAAAGGTGAAGGTTGAGATCAAAGGGGCCCGAGAATTCGGTGATTTTGAGGAGTGGTTTAACTACAGGCTCGCTAGAGCAGCACCCGAAACATGTGCCGAATTCCTTGGAAGTTTTGTAGCTGATAAGACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCTCACTCTTGGTGATTACATGAAAGATCGCAACTTCCCCTCAAACTTAGAATCCCTCATGTTTGGACGAGTCTTGCGAGGCGCAGACTCTTCTAAGAGAAATGCCTTGATCATCAAGCAAGTAATGCGCCAGATTATTACCTCTCTTAAGAAAATTCACGACACGGGAATTGTTCACAGGGATATAAAGCCAGACAACTTGGTAGTTACTAAGCGTGGTCGGATTAAACTCATTGATTTTGGTGCCGCAACTGACCTACGGATTGGAAAGAATTATGTTCCCAACAAGACACTACTGGATCCTTACTTCTGTCCCCCGGAATTATATGTACTTCCAGAAGAAACGCCGAGTCCTCCACCAGAGCCAATTGCAGCTCTCCTTTCGCCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCGGCTGGGATTGTGCTTCTGCAAATGGCAATACCATCATTGAGGTCTTCTGCTGCTTTGAGGAATTTCAATCTGGAAATAAAAAGCTGCGGATATGATTTGAAAAAATGGAGAGACTATACTCGCCTCAGGCCTGATTTTCAAATTCTGGATAGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAAGCTTATATCGGAGAGAGGTTACCTGAGAAGAGGACGGTTATCTGCTGCTGCTGCTTTAAGACATCCTTATTTTCTTCTGGGCGGGGATCAGGCAGCTGCAGTCCTCTCGAAATTAAGCTTAGACAGAAAGTGA 1530 0.4686 MNVVLGMASLLPPTPTVTATFQQHYCYYNLHNNQIAAICCFSPPHKKLLSITSKRKSRRGLIRCNAFFDDVATGLLELENAPYFQGLSETQRWWIVVFGGLAWIYFTARPGVLVGAIDAYLLAPLQLALDSLSGRRNLKRTDFLVGEKLGEGSFGVVYSGVLLPKNLNDSPADQKRPRRPPPRSALVPQSQSKDKVILKKVKVEIKGAREFGDFEEWFNYRLARAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLGDYMKDRNFPSNLESLMFGRVLRGADSSKRNALIIKQVMRQIITSLKKIHDTGIVHRDIKPDNLVVTKRGRIKLIDFGAATDLRIGKNYVPNKTLLDPYFCPPELYVLPEETPSPPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSSAALRNFNLEIKSCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLISERGYLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLDRK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0436 509 ProSiteProfiles Protein kinase domain profile. 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0436 509 MobiDBLite consensus disorder prediction 167 191 - -
Amo12g0436 509 SMART serkin_6 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0436 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 4 506 IPR044803 GO:0004674|GO:0009579
Amo12g0436 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Amo12g0436 509 SUPERFAMILY Protein kinase-like (PK-like) 140 491 IPR011009 -
Amo12g0436 509 Gene3D Transferase(Phosphotransferase) domain 1 286 492 - -
Amo12g0436 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0436 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 4 506 - -
Amo12g0436 509 Gene3D Phosphorylase Kinase; domain 1 130 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0436 Amo-Chr12 7143462 7145787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0436 304 405 AGC Kinase Gene Family AT5G04510 34.286 3.47e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Amo12g0436 Pkinase 3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0436 - - gmx:100788727 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0436 12 7143462 7145787 Amo02g0517 02 6401338 6404113 hybridization
Amo04g2128 04 91403430 91405032 Amo12g0436 12 7143462 7145787 PCT