Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0435 ATGAAAATGATTATGGAGGATGATGATATTGTTAGCAGGGAGGATGGTATAAAGGCAATAATAGAGGAGGAGCTTGTGAGAGGGCGTGAATTTGCCGATCAGTTAAGACAACTTATCGTCATCAATAAAGAAGATGATGACTCAGCTGATCATCAATGGCTTCTCAGTAACGTCCTCACCTCCTTCGCCAACACCCTCTCTCTCTTGAACAAATATCCCATACATCCAAATCCAATTCATCTTCACCAATCTTCTGCTTCTTCCTCTTCTTCCCATAATAGTGATCTTCTCATCATGCAAATGCAGCACCCGCAGATCCACCCTTGCTTGCTTACAGATGACAACCACATTTGCAAGACCCCGCCGCCGCCGGACACAAGAGGCTCTTACCGGAGAAAAAGAAACATAGAGACATGGAAGAAGGAGACGGAGAATGAAAGAGAGGAGGATGGGCATCAATGGAGGAAGTATGGACAGAAGGCAATCCAGAATGAGAAATACACAAGGAACTACTTCCGATGCACTCACAAGTACGAACAGGGATGCCGAGCAACCAAGCAAGTTCAGAGAATTCAAGAGAAGCCTCCGTTGTACAGGGCCACCTATCATGGCCGCCACACCTGCACCAACACAGACACTACTAATAACCACGTACTCATCATGGAGGAATTAGATTACCCTACTTCCTCCTCCTCCTCCATATTCCTCAGCTTTGACAACTCCTTCCCTAATCCACCAACCAATCCCTTTCTCTCATCATCTTCTTCTTCGCTTTTCCCCTCAACAGCACCGCCGCTACCTGCGATGATGATAGTGGAAGAGGATCGGCAAGTTCTTCCCTCAACTACTTCAACTCACCCCGTTTTGGATGATTCGTCAAGGCATCATGTGGTTCCTATATTATCATCGTCAGAAAATAATAATATTTGCTGGGATGATATGATGATGATGGCTGCCATGTCTCAAGTGTTATACGATTCTGTTGATGAGGGATGA 996 0.4548 MKMIMEDDDIVSREDGIKAIIEEELVRGREFADQLRQLIVINKEDDDSADHQWLLSNVLTSFANTLSLLNKYPIHPNPIHLHQSSASSSSSHNSDLLIMQMQHPQIHPCLLTDDNHICKTPPPPDTRGSYRRKRNIETWKKETENEREEDGHQWRKYGQKAIQNEKYTRNYFRCTHKYEQGCRATKQVQRIQEKPPLYRATYHGRHTCTNTDTTNNHVLIMEELDYPTSSSSSIFLSFDNSFPNPPTNPFLSSSSSSLFPSTAPPLPAMMIVEEDRQVLPSTTSTHPVLDDSSRHHVVPILSSSENNNICWDDMMMMAAMSQVLYDSVDEG* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0435 331 SMART WRKY_cls 148 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0435 331 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 292 IPR044810 GO:0003700
Amo12g0435 331 Gene3D WRKY domain 134 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0435 331 ProSiteProfiles WRKY domain profile. 143 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0435 331 Pfam WRKY DNA -binding domain 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0435 331 PANTHER WRKY TRANSCRIPTION FACTOR 70-RELATED 22 292 - -
Amo12g0435 331 SUPERFAMILY WRKY DNA-binding domain 145 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0435 Amo-Chr12 7116970 7118519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0435 18 213 WRKY Transcription Factor Family AT3G56400 36.139 8.50e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo12g0435 WRKY 1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0435 - - adu:107473290 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3058 14 129301412 129304291 Amo12g0435 12 7116970 7118519 PCT
Amo04g2073 04 90535848 90538475 Amo12g0435 12 7116970 7118519 PCT
Amo12g0435 12 7116970 7118519 Amo14g3058 14 129301412 129304291 PCT
Amo12g0435 12 7116970 7118519 Amo04g2073 04 90535848 90538475 PCT