Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0417 ATGGAAGCCTCATTATCCCTCTCAATCTCTAATAATCTTCAAAATCAAAACATGGAAACCAGTAGCAATGATGCTCCTTCTCCTCATCAAGTAGAACACAACAACACAAGCACGACGAGTTCATCAACAGAAGAAGAAGAACAATTAGCAGGAAAATCAAAGAAGAGGAAGAGAAGTAGTAGCAGTAATAGTTGTTGTAGGGAGAGTGAGGAGCACGCGACATACAGGGGCGTGAGGATGAGAAACTGGGGGAAGTGGGTGTCAGAAATAAGGCAACCGAAAAAGAAAAACAGAATATGGTTAGGCACGTATCCAACTGCCGAAATGGCGGCAAGAGCGCATGACGTGGCAGCCTTGGCGATCAAAGGTGATTCCGCATTCCTCAACTTCCCTCAACTTGCTTCTCTTCTTCCACGCCCTGCAACCACTTCGCCTAAAGATATTCAGGTTGCTGCCGCCATCGCCGCCAATGACACCGCCTTTCAGTTTCATCAACCACCACCCTCTTCTTTTCCTTCTTCCTCCTCTTCCTCTTCTTCGTCATCACAATCATCACAAGAGCGTGATGACGATACTTGTGATGACGATGGTGCATTGTTTGACTTGCCAGATCTTTTTCCTGCTGATGAGGATGGACTATGCTCCTATGCTTCATCGTCTTCTTCATCTTCATGGCAGTTCCGCATTGAGGATCCGTTGTTATTCTTCGCTTTCGACAACTACTAA 726 0.4601 MEASLSLSISNNLQNQNMETSSNDAPSPHQVEHNNTSTTSSSTEEEEQLAGKSKKRKRSSSSNSCCRESEEHATYRGVRMRNWGKWVSEIRQPKKKNRIWLGTYPTAEMAARAHDVAALAIKGDSAFLNFPQLASLLPRPATTSPKDIQVAAAIAANDTAFQFHQPPPSSFPSSSSSSSSSSQSSQERDDDTCDDDGALFDLPDLFPADEDGLCSYASSSSSSSWQFRIEDPLLFFAFDNY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0417 241 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Amo12g0417 241 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Amo12g0417 241 CDD AP2 75 131 IPR001471 GO:0003700|GO:0006355
Amo12g0417 241 MobiDBLite consensus disorder prediction 165 204 - -
Amo12g0417 241 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Amo12g0417 241 MobiDBLite consensus disorder prediction 1 70 - -
Amo12g0417 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 17 218 - -
Amo12g0417 241 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Amo12g0417 241 MobiDBLite consensus disorder prediction 1 46 - -
Amo12g0417 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 218 - -
Amo12g0417 241 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Amo12g0417 241 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Amo12g0417 241 MobiDBLite consensus disorder prediction 165 186 - -
Amo12g0417 241 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0417 Amo-Chr12 6848064 6849029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0417 69 235 AP2-EREBP Transcription Factor Family AT2G44940 47.596 8.31e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo12g0417 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0417 - - ahf:112726739 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0417 12 6848064 6849029 Amo12g0417 12 6848064 6849029 ECH