Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0416 ATGTTTGGGCGTGGAGCAAGAAGGAGCAGCGATAACACCAAATATTATGATGTTCTCGGTGTTTCAAAAAACGCTAATGAAGATGAAATCAAGAAGGCCTATAGAAAGGCTGCAATGAAGAATCATCCAGATAAAGGTGGAGATCCAGAGAAGTTCAAGGAGCTAGGTCAAGCTTATGAAGTTTTAAGTGATCCGGAAAAGAGAGAACTGTATGATCAATATGGTGAAGATGCCCTTAAGGAAGGAATGGGAGGAGGAGGAAGCTCATTCCATAACCCATTTGATATTTTTGAATCATTTTTTGGTGGAGCTAGCTTTGGTGGTGGTAGCTCACGAGGTAGAAGACAAAAGCATGGTGAAGATGTTGTGCATTCTCTAAAGGTTTCCTTGGAGGATGTTTATAATGGCACAACAAAGAAACTATCTCTTTCTAGAAATGTATTGTGCCCGAAATGTAAAGGGAAGGGTTCCAAAAGTGGAAATGCTGGTAGGTGTTATGGATGCCAAGGCACGGGTATGAAGATTACAACAAGGCAGATTGGACTGGGCATGATTCAACAAATGCAACACATCTGTCCTGAATGCAGAGGAAGTGGCGAGGTCATTAGCGAGAGAGATAGATGCACTCAGTGCAAGGGAAACAAGGTCTCCCAAGAAAAGAAGGTGCTTGAGGTGCATGTTGAGAAGGGGATGCAACAGGGCCAGAAGATTGTGTTTGAAGGTCAAGCTGATGAAGCGCCTGACACAATCACAGGAGACATTGTTTTTGTCTTACAAGTGAAGGAGCACCCACGATTCAAACGAGAGCATGATGACCTCTATATTGAGCACAGTCTCAACTTGACCGAGGCTCTTTGTGGCTTCCAGTTTGCTGTCACCCATCTTGATGGGAGACAACTATTGATCAAATCAAACCCTGGAGAAGTCATCAAACCAGGCCAACAAAAAGCCATAAATGATGAGGGAATGCCACAACATAATAGGCCCTTCATGAAGGGTCGTCTTTACATCAAGTTCAATGTGGATTTTCCAGACTCGGGGTTCCTTTCCCCTGACCAATGCCGATTATTAGAGACGATATTACCTCAGAAATCCAGCAAGCAGTTGACAGATATGGAGCTGGATGAGTGTGAGGAGACCACATTACATGATGTCAACATGAAGGATGAGATGAGAAGAAAGCAGCAACAGCACTACCACGAGGCATATGATGATGATGATGATGAGCAATCCATGCCTCGAGTGCAATGTGCTCAACAGTAG 1263 0.4394 MFGRGARRSSDNTKYYDVLGVSKNANEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRELYDQYGEDALKEGMGGGGSSFHNPFDIFESFFGGASFGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNVLCPKCKGKGSKSGNAGRCYGCQGTGMKITTRQIGLGMIQQMQHICPECRGSGEVISERDRCTQCKGNKVSQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFKREHDDLYIEHSLNLTEALCGFQFAVTHLDGRQLLIKSNPGEVIKPGQQKAINDEGMPQHNRPFMKGRLYIKFNVDFPDSGFLSPDQCRLLETILPQKSSKQLTDMELDECEETTLHDVNMKDEMRRKQQQHYHEAYDDDDDEQSMPRVQCAQQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0416 420 CDD DnaJ_C 120 346 - -
Amo12g0416 420 MobiDBLite consensus disorder prediction 386 412 - -
Amo12g0416 420 Gene3D - 149 215 - -
Amo12g0416 420 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Amo12g0416 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 346 IPR008971 GO:0006457|GO:0051082
Amo12g0416 420 Gene3D DnaJ domain 11 111 IPR036869 -
Amo12g0416 420 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Amo12g0416 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 420 IPR044713 GO:0006457|GO:0030544
Amo12g0416 420 Hamap Chaperone protein DnaJ [dnaJ]. 11 390 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo12g0416 420 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Amo12g0416 420 MobiDBLite consensus disorder prediction 386 420 - -
Amo12g0416 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 217 IPR036410 -
Amo12g0416 420 Pfam DnaJ domain 14 72 IPR001623 -
Amo12g0416 420 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Amo12g0416 420 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Amo12g0416 420 Gene3D - 112 263 - -
Amo12g0416 420 PANTHER CHAPERONE PROTEIN DNAJ A6 8 420 - -
Amo12g0416 420 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Amo12g0416 420 Gene3D - 264 345 - -
Amo12g0416 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Amo12g0416 420 SMART dnaj_3 13 67 IPR001623 -
Amo12g0416 420 PRINTS DnaJ domain signature 16 34 IPR001623 -
Amo12g0416 420 PRINTS DnaJ domain signature 47 67 IPR001623 -
Amo12g0416 420 PRINTS DnaJ domain signature 67 86 IPR001623 -
Amo12g0416 420 CDD DnaJ 15 64 IPR001623 -
Amo12g0416 420 SUPERFAMILY Chaperone J-domain 10 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0416 Amo-Chr12 6816426 6820380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0416 15 74 C2H2 Transcription Factor Family AT1G74250 46.377 7.68e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0416 K09503 - gmx:100800590 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0416 12 6816426 6820380 Amo12g0416 12 6816426 6820380 ECH