Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0410 ATGCATGGGAATAAGAGAAAGAAAGAGAGAGGGGATGAATTAGTAGATTACATAAGGAAAGGGCCATGGAAGAAAGAGGAAGATGAAGTGCTACTCAACCATGTAAGCAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAGGGTCTTCTTCATAGAACCGGCAAGTCTTGTCGCCTTCGTTGGGTCAACAAGCTTCGACCTAACCTCAAGAATGGGTGCAAGTTTACAGCGGAGGAAGAGAGGGTTGTGATAGAATTGCAGGCACAATTTGGGAACAAATGGGCTAAGATTGCGTCCTATTTGAGTGGAAGAACAGACAATGATGTCAAGAATTTCTGGAGCAGTAGGCAGAAGAGGCTTGCTAGGATTCTTCAGGCATCAGCATCAACATCCACCTCCAAATCACACAGGAACAAACCTAAACTTCATCATCATCTTCCCACTTTCCAGGCTCCTAAATTGAGTTCTTCATCAGAGGGAGAATCGTCATCAAAGCCTCATCATCCATGCTCGTTCTCCTGCAATGACAATTCCGAGGTTATTAAAATGGTGGCATTACCAGATCTTATCAAGCCCAAGTTGCCTAATTCTGAGCAAGAAGAATCTGCACTTTTGGAGAGCAATAAAAGCAGTAGTATGATGGAACAAATTCCCTTCCCTCAGATTCCTGATGAACTCCAAACTGATCTAACACCATTCTCATTGGGAGACCAAGATTTCTTGACTAGAATTGATGATCCAAATTTTGCTGATTACTTTGGACCTCTTGGTGCATATGAGCTTGGGCTAGCCCCACAACACACCATTGGGTTCCCTTTCTTTGATCCATCAGAAGGAAGTTGCAGAATTGGGTCAACGGATATCATAGGTAGCTCCAAAAACTATGACAGCATCTTTGATGATCTCCCAGTTAACATGTTTGATCATATGGATCCACCTTCAATTCCTTCCAAGCTCTGA 966 0.4358 MHGNKRKKERGDELVDYIRKGPWKKEEDEVLLNHVSKYGPRDWSSIRSKGLLHRTGKSCRLRWVNKLRPNLKNGCKFTAEEERVVIELQAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILQASASTSTSKSHRNKPKLHHHLPTFQAPKLSSSSEGESSSKPHHPCSFSCNDNSEVIKMVALPDLIKPKLPNSEQEESALLESNKSSSMMEQIPFPQIPDELQTDLTPFSLGDQDFLTRIDDPNFADYFGPLGAYELGLAPQHTIGFPFFDPSEGSCRIGSTDIIGSSKNYDSIFDDLPVNMFDHMDPPSIPSKL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0410 321 MobiDBLite consensus disorder prediction 152 173 - -
Amo12g0410 321 Gene3D - 75 148 - -
Amo12g0410 321 PANTHER TRANSCRIPTION FACTOR DUO1 13 319 - -
Amo12g0410 321 ProSiteProfiles Myb-like domain profile. 76 119 IPR001005 -
Amo12g0410 321 SMART sant 19 69 IPR001005 -
Amo12g0410 321 SMART sant 73 121 IPR001005 -
Amo12g0410 321 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Amo12g0410 321 Gene3D - 20 72 - -
Amo12g0410 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 71 IPR017930 -
Amo12g0410 321 CDD SANT 76 115 IPR001005 -
Amo12g0410 321 CDD SANT 22 67 IPR001005 -
Amo12g0410 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 123 IPR017930 -
Amo12g0410 321 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Amo12g0410 321 Pfam Myb-like DNA-binding domain 23 73 - -
Amo12g0410 321 Pfam Myb-like DNA-binding domain 76 115 IPR001005 -
Amo12g0410 321 MobiDBLite consensus disorder prediction 128 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0410 Amo-Chr12 6713396 6714791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0410 18 319 MYB Transcription Factor Family AT3G60460 49.038 4.41e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g0410 Myb_DNA-bind_6 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0410 K09422 - gmx:100818656 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0410 12 6713396 6714791 Amo12g0410 12 6713396 6714791 ECH