Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0405 ATGAGAAAGTTTGAGTGCCAATACTGTTTGAAGGAATTTGCAAATTTACAAGCACTTGGAGGGCACCAAAATGCTCACAAAGAAAAGAGGATGAAGACGAAAAGGTTGCAGCTTCAAGCAAGAAAAGCCACCATAAACTACTATCTTCAACAGCCCAATTTCCCAAACAACAATCATCATGATTTTTCTTACCATAATCATAATCATAATAACAGTAACACACCTTGGTTCTATAATCCTTCTTCTTACAACTACTATTATGACTTCACAATTTGTGAAAAATCCCAAATTAGCTTCAACATCGAAGATCAAGATTCAAACTTTTTGGTTGAGAAAGCATCAAATAGTAATTGGTATTCATCTCTGCCATCATCATATCAAGCTGCTGCTTTTTCACCACAAGATTCTTGCATATTCAATTTCTCTAATACTAGTACAGATAATAACAATAATAATAATAATAATAATAAGACTTACAACATTTTCAAGCCTGCAATTTTCTTGATTCTTCAAATCATCAAATACAAAGTCATAGAAGAGGAAGAGCGATGGTTTCGACGGTGCTGGGTTTCCGCGAAGAAGAAGAAAAATGGTGATGGTCATCGAGAATGGATCTCAACAGAGATGGTGGTGATAGAGATGGAGGGTCGGAGAAGAAAGGAGAAAGAAGGAGAATGA 678 0.3555 MRKFECQYCLKEFANLQALGGHQNAHKEKRMKTKRLQLQARKATINYYLQQPNFPNNNHHDFSYHNHNHNNSNTPWFYNPSSYNYYYDFTICEKSQISFNIEDQDSNFLVEKASNSNWYSSLPSSYQAAAFSPQDSCIFNFSNTSTDNNNNNNNNNKTYNIFKPAIFLILQIIKYKVIEEEERWFRRCWVSAKKKKNGDGHREWISTEMVVIEMEGRRRKEKEGE* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0405 225 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Amo12g0405 225 PANTHER ZINC FINGER PROTEIN 5 2 156 - -
Amo12g0405 225 Pfam C2H2-type zinc finger 4 28 - -
Amo12g0405 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Amo12g0405 225 PANTHER ZINC FINGER PROTEIN 5 2 156 IPR044299 GO:0010090
Amo12g0405 225 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0405 Amo-Chr12 6642426 6643252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0405 1 52 C2H2 Transcription Factor Family AT1G10480 72.727 1.03e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0405 - - ahf:114925716 303.523