Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0397 ATGAATACAATGATGCAAGGGGAAGGAGAAGTGGAAAACATTCCGCACTGTACGATGTTGTTCCTTCACCGCCGTCTATGCACCACCGCCACCAGAACACTGGTCCCAAACCTCTCAAAGGTTCCTTCAAAGTACAAGAACCTTGCTCTCTCTCAAGCCCAGAAGATCCTCACTGATTACCTTCATTCCACAAGGTCCATCCCTTATGCCTTTGCTGATCAGATTGCTGCTAATTCTCACACTTCTCTCTCCAACCTCATTGCAAAGGTGCGATTTTCAGCTCCGTCTTTCTCCCACACCCTCAACAAGTTCCTCAGGTACAACCCCATCAATGAATTTGAGTTCTTTTTTGAAAGCATTGGCATAAAGTATAGTCAAGTTCCTAACTTGTTGCCACCCCATAAGTTTTTCTTCTCTGAAGATGGCTCCATTTTGGATGCTGCTTGTGTGCTCTATGAATTTGGGTTCCCTTGGGATAAGCTTGGTTTGCTTTATGTGGAACGTTGTTCTGTGTTTAGGTGTAATACTGATGAGTTGAAGGGCAGGCTGTGTGTGCTGAAAAGTTATGGTTTTTGCAGTGTTCAGGTCATTGGGATATGTTTGGCTTTCCCTTTTGTTTTTGGTGAGCAGGGAGGAGTGTTGGAAGCTGAGATTGATGGGCTACTTGCTGATCTCAGGTTGGTTTTTCTGGATTTTGATTTGGCAGGGTTTGTTGAGGGGAATGCAGATTCTTGGTACGAGGTATGTAGGAAAATTCGGGTTTTTTACAATTTGAATAGTGAGAAGGGTAAGATGGGGGAACTCATTGGAAGGTATAAGAATGTGATTCTTGAGCATGGAGAAGAGGAGTTGATGCAGAAAGCTGAGTATTTTTCTAGGTTTGGTGTCAAGAAGGAGGAAGTAGCTCGATTGATCCTACATGACTCGGAATTGTTGAATTTTGATTTCGAAACGCCGGTGATCAATGTATTGAAGCTGTTGAAACACTTTGGCATGAGCTCCAAGGATCTCGAGGATGTGCAGCGAAACTATGCTCATGCATTGGGAACAATAAAAATGGTTAATTTGCCTAATGTAATGAGGGCTTTGGGTTTAAGTAAGTGGTTCTTTAATAGGATAAAGGACGGGACGCATCAACTCTTACTGACTTATGTCACAAGCTTTCCCAATGAAGACCAAGATAAAGGATATCAAGATGGTTTAAAGGCGATTCGTGCTTCGAGAACCCCAGTTCACACCATGAATAAACTGAATTTCTTGCATGCCTTAGGCTTTGGAGAAACTGCTTTGACCATGGCTATCCTAACTTACTTGAATGGGACTAGCAGCGAGTTACAGGAACGATTCGATTGCCTTCTTCATTTAGGGATTGAATTCTCAAAGCTCTCAAAGATAGTTGCAATTCGACCTAAGGTTCTAAGCCAACACCCGAAAATCATTGAGAAAAAGATTAAGTTCCTCTATGAGGAAATGGGATCCTCTGTGGAGCTTTTGGACACTTTTCCAGCATTCTTATGTTTTGACTTGGAAAAGCGCATTAAACCTAGGTTCAGATTCTATATGTGGATGATAGAAAAGGGTTATTGTGCCAAAAACTTCTCTATAGCAACCATGATTGCGACCAGCGACAAGAACTTTGTTCCTCATGCTTTTCGTATCCACCCAGCTGCTCCGAAACATTGGTTTGAGCAATTCTATCTCCGCAAATTGCCGGAATGA 1719 0.4252 MNTMMQGEGEVENIPHCTMLFLHRRLCTTATRTLVPNLSKVPSKYKNLALSQAQKILTDYLHSTRSIPYAFADQIAANSHTSLSNLIAKVRFSAPSFSHTLNKFLRYNPINEFEFFFESIGIKYSQVPNLLPPHKFFFSEDGSILDAACVLYEFGFPWDKLGLLYVERCSVFRCNTDELKGRLCVLKSYGFCSVQVIGICLAFPFVFGEQGGVLEAEIDGLLADLRLVFLDFDLAGFVEGNADSWYEVCRKIRVFYNLNSEKGKMGELIGRYKNVILEHGEEELMQKAEYFSRFGVKKEEVARLILHDSELLNFDFETPVINVLKLLKHFGMSSKDLEDVQRNYAHALGTIKMVNLPNVMRALGLSKWFFNRIKDGTHQLLLTYVTSFPNEDQDKGYQDGLKAIRASRTPVHTMNKLNFLHALGFGETALTMAILTYLNGTSSELQERFDCLLHLGIEFSKLSKIVAIRPKVLSQHPKIIEKKIKFLYEEMGSSVELLDTFPAFLCFDLEKRIKPRFRFYMWMIEKGYCAKNFSIATMIATSDKNFVPHAFRIHPAAPKHWFEQFYLRKLPE* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0397 572 SMART mt_12 463 494 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 SMART mt_12 162 192 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 SMART mt_12 495 527 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 Pfam mTERF 442 546 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 Pfam mTERF 248 349 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 33 565 - -
Amo12g0397 572 PANTHER CGI-12 PROTEIN-RELATED 33 565 IPR003690 GO:0003690|GO:0006355
Amo12g0397 572 Gene3D Transcription termination factor 3, mitochondrial 401 565 IPR038538 -
Amo12g0397 572 Gene3D Transcription termination factor 3, mitochondrial 242 375 IPR038538 -
Amo12g0397 572 Gene3D Transcription termination factor 3, mitochondrial 83 231 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0397 Amo-Chr12 6522006 6524334 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo12g0397 mTERF 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0397 - - adu:107473184 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0397 12 6522006 6524334 Amo12g0397 12 6522006 6524334 ECH