Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0370 ATGGATGGAACTGAGGATGATGATCTAAGGTATCCCTCTAACCCATATGGTGTTAATCACCAGGGTTATGGCTATCTGAGTCATAGGAGACTTCCGGTTCGGACTTCTCAGTATCTTCAGCCAGTTGCAAATGATTTTGTGGAACATAATAACAATGCCAATGATAATGAGGAGGAGAAGGAGGATGAAGAAGATGAAGATGAAGAACAGATAATAGAAGAAGATCATGATGATGGTGATGATGTTGATTCCCAAAGGAATGCTGTCCCCAACAATGTTGAGGAAGGTGATGATGAAGACAGGGATGGGGATGAAATTGGTGGTAACAATGATGATGGCGAGGAGGAGGATGATGAGGAGGATGAGGAAGATGATGATGATGCTAAGCCGAAAATATATAGCATGAAGGTTGATGATGATATGGAGTGGCACCCGAAAAAGCGAAAGCTGAAGAGTTTGATTTCAGCTTATGAATTTGCACCCCGGGTACCAGCGCCATCGGCTGCGGCTCCTTCAACCCCTAAACCATCTTCTGGTGGTAGGAACTCCCTTACTGATTGGACCGAGCGCGAAACTTTCGTTCTTCTTGATGCCTGGGGTGATAAGTTTCTTCAACATGGGAGGAAGAGTCTTCGGTCTGAGGAATGGCAAGAAGTTGCAGAGAAGGTATCAAAAGTTTCCAAGATTGAAAGGAAAGATGCTCAGTGTCGAAACCGGTTAGATACCTTGAAGAAGAAGTACAAGAAGGAGAAGGCTAAATCAGAGAAAATGGGTAGTGGAACTTGCAAGTGGGTTTATTTTCAGAGGATGGATAAGCTGATGTCCTCTCCAGTGCAGCAACCAGGTCTCATGCGGTTTGGACTCCGGAGAATATGTGTTTACGAATCCTCGAGTCTATTTGAACCGCGCAAATGGGTTTGA 921 0.4463 MDGTEDDDLRYPSNPYGVNHQGYGYLSHRRLPVRTSQYLQPVANDFVEHNNNANDNEEEKEDEEDEDEEQIIEEDHDDGDDVDSQRNAVPNNVEEGDDEDRDGDEIGGNNDDGEEEDDEEDEEDDDDAKPKIYSMKVDDDMEWHPKKRKLKSLISAYEFAPRVPAPSAAAPSTPKPSSGGRNSLTDWTERETFVLLDAWGDKFLQHGRKSLRSEEWQEVAEKVSKVSKIERKDAQCRNRLDTLKKKYKKEKAKSEKMGSGTCKWVYFQRMDKLMSSPVQQPGLMRFGLRRICVYESSSLFEPRKWV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0370 306 MobiDBLite consensus disorder prediction 162 184 - -
Amo12g0370 306 Coils Coil 226 246 - -
Amo12g0370 306 Coils Coil 46 74 - -
Amo12g0370 306 PANTHER OS01G0718900 PROTEIN 69 283 - -
Amo12g0370 306 MobiDBLite consensus disorder prediction 128 144 - -
Amo12g0370 306 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 69 283 IPR044823 -
Amo12g0370 306 MobiDBLite consensus disorder prediction 36 50 - -
Amo12g0370 306 Gene3D - 187 249 - -
Amo12g0370 306 MobiDBLite consensus disorder prediction 1 23 - -
Amo12g0370 306 MobiDBLite consensus disorder prediction 57 80 - -
Amo12g0370 306 Pfam Myb/SANT-like DNA-binding domain 186 273 IPR044822 -
Amo12g0370 306 MobiDBLite consensus disorder prediction 36 144 - -
Amo12g0370 306 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0370 Amo-Chr12 6174097 6175017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0370 156 281 Trihelix Transcription Factor Family AT3G14180 39.535 5.27e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo12g0370 Myb_DNA-bind_4 7.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0370 - - tcc:18595893 238.039